miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 5' -56.7 NC_001798.1 + 144722 1.07 0.003232
Target:  5'- aGUUUACACACCCGGCCCUGACGGGUGc -3'
miRNA:   3'- -CAAAUGUGUGGGCCGGGACUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 74422 0.66 0.87122
Target:  5'- ---gAC-CGCCgCGGCCCUGcaccucuACGGGg- -3'
miRNA:   3'- caaaUGuGUGG-GCCGGGAC-------UGCCCac -5'
5109 5' -56.7 NC_001798.1 + 71902 0.67 0.856952
Target:  5'- ----cCGCuuCCCGGCCCUGGaGGGc- -3'
miRNA:   3'- caaauGUGu-GGGCCGGGACUgCCCac -5'
5109 5' -56.7 NC_001798.1 + 93858 0.67 0.856952
Target:  5'- --cUACGCcgccuuCUCGGCCCUgaagcgcgcgGACGGGUc -3'
miRNA:   3'- caaAUGUGu-----GGGCCGGGA----------CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 1414 0.67 0.849148
Target:  5'- ---gGCGCGCCCaGGCCCcagcgcgcgcaGGCGcGGUGc -3'
miRNA:   3'- caaaUGUGUGGG-CCGGGa----------CUGC-CCAC- -5'
5109 5' -56.7 NC_001798.1 + 52437 0.67 0.849148
Target:  5'- --gUACGCGCUgcacaCGGCCCUGGCGa--- -3'
miRNA:   3'- caaAUGUGUGG-----GCCGGGACUGCccac -5'
5109 5' -56.7 NC_001798.1 + 29476 0.67 0.849148
Target:  5'- ----gUACACCCGGuuggucCCCgggGACGGGg- -3'
miRNA:   3'- caaauGUGUGGGCC------GGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 48181 0.67 0.848357
Target:  5'- ---cGCACGCCCGGCUggcggcgguacagCUGugGGa-- -3'
miRNA:   3'- caaaUGUGUGGGCCGG-------------GACugCCcac -5'
5109 5' -56.7 NC_001798.1 + 99950 0.67 0.841149
Target:  5'- ----cCACGCCCGcGCCaCUG-CGGGa- -3'
miRNA:   3'- caaauGUGUGGGC-CGG-GACuGCCCac -5'
5109 5' -56.7 NC_001798.1 + 19839 0.66 0.87195
Target:  5'- -gUUGCGCGacaCGcGCCCggGGCGGGUa -3'
miRNA:   3'- caAAUGUGUgg-GC-CGGGa-CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 102553 0.66 0.87195
Target:  5'- ----cCGCACgCGGUCagcGGCGGGUGg -3'
miRNA:   3'- caaauGUGUGgGCCGGga-CUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 76957 0.66 0.879133
Target:  5'- ---gGCGCugCgGGCggaCCUGugGGGg- -3'
miRNA:   3'- caaaUGUGugGgCCG---GGACugCCCac -5'
5109 5' -56.7 NC_001798.1 + 81769 0.66 0.892838
Target:  5'- ---cGCGCGcCCCGGgCCUccgccccccccGAgGGGUGg -3'
miRNA:   3'- caaaUGUGU-GGGCCgGGA-----------CUgCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 75958 0.66 0.892838
Target:  5'- ---aGCGCGCCgGGcCCCUGACc-GUGa -3'
miRNA:   3'- caaaUGUGUGGgCC-GGGACUGccCAC- -5'
5109 5' -56.7 NC_001798.1 + 72846 0.66 0.892838
Target:  5'- ---cACGCGCggcaCgGGCCCcGAgCGGGUGg -3'
miRNA:   3'- caaaUGUGUG----GgCCGGGaCU-GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 22875 0.66 0.892838
Target:  5'- ---cGC-CGCgCGGCCCggguuCGGGUGg -3'
miRNA:   3'- caaaUGuGUGgGCCGGGacu--GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 110275 0.66 0.892838
Target:  5'- ---gGCGCgACCuCGGCCUcGugGGGg- -3'
miRNA:   3'- caaaUGUG-UGG-GCCGGGaCugCCCac -5'
5109 5' -56.7 NC_001798.1 + 18759 0.66 0.892838
Target:  5'- ---gACGCaaGCCCGGCUCUGugGaGUu -3'
miRNA:   3'- caaaUGUG--UGGGCCGGGACugCcCAc -5'
5109 5' -56.7 NC_001798.1 + 117496 0.66 0.886097
Target:  5'- --cUGCGCAaCgCGGUCgUGGCGGGa- -3'
miRNA:   3'- caaAUGUGU-GgGCCGGgACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 37531 0.66 0.886097
Target:  5'- ---gACACGCCCcaaGCCCcaggguggugUGGCGGGa- -3'
miRNA:   3'- caaaUGUGUGGGc--CGGG----------ACUGCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.