Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 146297 | 0.66 | 0.662268 |
Target: 5'- gCGGGgaGUGgGC--GGCCGGGcgGGa -3' miRNA: 3'- gGUCCggCACgCGgaCCGGCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 97476 | 0.66 | 0.662268 |
Target: 5'- -gGGGCCGgcggcGCGaCCgggggGGCCGaGGA-GGa -3' miRNA: 3'- ggUCCGGCa----CGC-GGa----CCGGC-CCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 111897 | 0.66 | 0.659374 |
Target: 5'- gCCGGGggagGUGCGCCUGGgCCagggcgaauacguaGGGGgagGGg -3' miRNA: 3'- -GGUCCgg--CACGCGGACC-GG--------------CCCUa--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 151261 | 0.66 | 0.658409 |
Target: 5'- uCCAcGGCCGUGCcggcccgcacggccGCCUcGGCCuccacgcGGGuccgGGg -3' miRNA: 3'- -GGU-CCGGCACG--------------CGGA-CCGG-------CCCua--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 118924 | 0.66 | 0.652615 |
Target: 5'- gCCAGGCgacggaCGUGCGCCUGGaguCGcuGGAc-- -3' miRNA: 3'- -GGUCCG------GCACGCGGACCg--GC--CCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 20888 | 0.67 | 0.574476 |
Target: 5'- aCGGGgCGUcuGCGCUUccgugaacccgggGGUgGGGAUGGg -3' miRNA: 3'- gGUCCgGCA--CGCGGA-------------CCGgCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 135190 | 0.67 | 0.569699 |
Target: 5'- uCCAGGCCcaGCuCCUGGCCgcccucgcgggccucGGGGaGGc -3' miRNA: 3'- -GGUCCGGcaCGcGGACCGG---------------CCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 101803 | 0.67 | 0.565884 |
Target: 5'- uCCGcGCCGgGCGCCUcgGGuuGGGGUa- -3' miRNA: 3'- -GGUcCGGCaCGCGGA--CCggCCCUAcc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 31237 | 0.67 | 0.565884 |
Target: 5'- gCAGcGgCG-GCGCCccguugcgGGCgGGGGUGGg -3' miRNA: 3'- gGUC-CgGCaCGCGGa-------CCGgCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 12308 | 0.67 | 0.565884 |
Target: 5'- gCCAGGCCcUGCagcgagcgGCCgGGCauacCGGGAUcGGa -3' miRNA: 3'- -GGUCCGGcACG--------CGGaCCG----GCCCUA-CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 69134 | 0.67 | 0.563027 |
Target: 5'- cCCAGGCCucgGCcagucgcucggucuGCC-GGCCGGGcgGa -3' miRNA: 3'- -GGUCCGGca-CG--------------CGGaCCGGCCCuaCc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 24805 | 0.67 | 0.575432 |
Target: 5'- gCUGGuGCUGaUGCGCCUGcGCgGGGAccugcgcgUGGc -3' miRNA: 3'- -GGUC-CGGC-ACGCGGAC-CGgCCCU--------ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 152500 | 0.67 | 0.575432 |
Target: 5'- cCCAauaGCCGcGCGCCccGGCgGGGgcGGa -3' miRNA: 3'- -GGUc--CGGCaCGCGGa-CCGgCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 108832 | 0.67 | 0.585016 |
Target: 5'- aCguGGCCcguggGCGUCUGGacgaCGGGcgGGc -3' miRNA: 3'- -GguCCGGca---CGCGGACCg---GCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 34876 | 0.67 | 0.593668 |
Target: 5'- cCCGGcGCCGgGCGgCUacccgggacccccGGCCGGGAa-- -3' miRNA: 3'- -GGUC-CGGCaCGCgGA-------------CCGGCCCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 25691 | 0.67 | 0.594631 |
Target: 5'- gCGGGCCcgccacgGcCGCCUGGgCGGGcaacUGGa -3' miRNA: 3'- gGUCCGGca-----C-GCGGACCgGCCCu---ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 96335 | 0.67 | 0.594631 |
Target: 5'- uCCAGGUgcgCGUGCugcggcggcaCCUgcGGCCGGGGcUGGa -3' miRNA: 3'- -GGUCCG---GCACGc---------GGA--CCGGCCCU-ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 148083 | 0.67 | 0.594631 |
Target: 5'- aCGGGCCGgGgGCCggGGCCgcuaGGGAa-- -3' miRNA: 3'- gGUCCGGCaCgCGGa-CCGG----CCCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 15268 | 0.67 | 0.60427 |
Target: 5'- aCGGGCgGUGCcCCgGGuuCCGGGcGUGGc -3' miRNA: 3'- gGUCCGgCACGcGGaCC--GGCCC-UACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 39560 | 0.67 | 0.556378 |
Target: 5'- cCgGGGCCGUccguccGCGCCgacgCGGGGUGGc -3' miRNA: 3'- -GgUCCGGCA------CGCGGaccgGCCCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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