miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 34841 0.72 0.329362
Target:  5'- cCCGGGCCGgacCGCCgGGCgGGGGa-- -3'
miRNA:   3'- -GGUCCGGCac-GCGGaCCGgCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 46226 0.71 0.343679
Target:  5'- --cGGCUGUaugaccgugGCGCCguUGGCCGGGAcGGu -3'
miRNA:   3'- gguCCGGCA---------CGCGG--ACCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 145820 0.71 0.343679
Target:  5'- gCGGGCgCG-GCGgC-GGUCGGGGUGGg -3'
miRNA:   3'- gGUCCG-GCaCGCgGaCCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 152275 0.71 0.343679
Target:  5'- gCCGGGCCGggGUuCCaUGaGCCGGGGUaGGg -3'
miRNA:   3'- -GGUCCGGCa-CGcGG-AC-CGGCCCUA-CC- -5'
5111 3' -62.8 NC_001798.1 + 120222 0.71 0.351004
Target:  5'- cCCGGGCCGUuggccccCGCCgaGGCCaGGAUGcGg -3'
miRNA:   3'- -GGUCCGGCAc------GCGGa-CCGGcCCUAC-C- -5'
5111 3' -62.8 NC_001798.1 + 135313 0.71 0.351004
Target:  5'- cCCGGGCCGUgcuggaGCGCCUGguGCCGGa---- -3'
miRNA:   3'- -GGUCCGGCA------CGCGGAC--CGGCCcuacc -5'
5111 3' -62.8 NC_001798.1 + 146497 0.71 0.365984
Target:  5'- gCCGGGCCGgcaacgccccGCGCC-GGCCGcGGcgGa -3'
miRNA:   3'- -GGUCCGGCa---------CGCGGaCCGGC-CCuaCc -5'
5111 3' -62.8 NC_001798.1 + 33395 0.71 0.373637
Target:  5'- gCAGGagUGggaggGCGCCUGGCuCGGGGaGGg -3'
miRNA:   3'- gGUCCg-GCa----CGCGGACCG-GCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 85265 0.71 0.373637
Target:  5'- gCgGGGCCGcGCGCgaGGCuuCGGGggGGc -3'
miRNA:   3'- -GgUCCGGCaCGCGgaCCG--GCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 43643 0.7 0.388475
Target:  5'- cCCAGGggcgagggcugcuCCGUGCugGCCgcggGGCUGGGGucgUGGg -3'
miRNA:   3'- -GGUCC-------------GGCACG--CGGa---CCGGCCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 132130 0.7 0.389267
Target:  5'- gCAGGCgGcccUGCGCCgccgggGGCCGGcGGgcgGGg -3'
miRNA:   3'- gGUCCGgC---ACGCGGa-----CCGGCC-CUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 135797 0.7 0.389267
Target:  5'- -gAGGCCGUGUGCgC-GGCcCGGGGcgucaUGGa -3'
miRNA:   3'- ggUCCGGCACGCG-GaCCG-GCCCU-----ACC- -5'
5111 3' -62.8 NC_001798.1 + 25945 0.7 0.397241
Target:  5'- gCCGGcagugcGCCGUGCG-CUGGCCGGcGGcgcgGGa -3'
miRNA:   3'- -GGUC------CGGCACGCgGACCGGCC-CUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 41366 0.7 0.397241
Target:  5'- aCCcGGCgGcucaugGCGCCggggaUGGCCGGGAgGGa -3'
miRNA:   3'- -GGuCCGgCa-----CGCGG-----ACCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 6672 0.7 0.404506
Target:  5'- gCAGGCCGgGCGCCgccuucgUGGaCGGGAcaccaugucuUGGg -3'
miRNA:   3'- gGUCCGGCaCGCGG-------ACCgGCCCU----------ACC- -5'
5111 3' -62.8 NC_001798.1 + 92706 0.7 0.408579
Target:  5'- -gAGGCCGUGUgcaucaGCaacaccuuccugcauCUGGgCGGGAUGGa -3'
miRNA:   3'- ggUCCGGCACG------CG---------------GACCgGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 89185 0.7 0.421781
Target:  5'- aCAGGuuGUGgGCCUGgaugauGCUGGGGUa- -3'
miRNA:   3'- gGUCCggCACgCGGAC------CGGCCCUAcc -5'
5111 3' -62.8 NC_001798.1 + 6265 0.7 0.430162
Target:  5'- aCGGGCCGgggggacGgGCCggggggacgGGCCGGGG-GGa -3'
miRNA:   3'- gGUCCGGCa------CgCGGa--------CCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 133013 0.7 0.430162
Target:  5'- aCCuccGGCCGgacgucGCGCC-GGCCGaGGUGGu -3'
miRNA:   3'- -GGu--CCGGCa-----CGCGGaCCGGCcCUACC- -5'
5111 3' -62.8 NC_001798.1 + 6304 0.7 0.430162
Target:  5'- aCGGGCCGgggggacGgGCCggggggacgGGCCGGGG-GGa -3'
miRNA:   3'- gGUCCGGCa------CgCGGa--------CCGGCCCUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.