Results 21 - 40 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 20888 | 0.67 | 0.574476 |
Target: 5'- aCGGGgCGUcuGCGCUUccgugaacccgggGGUgGGGAUGGg -3' miRNA: 3'- gGUCCgGCA--CGCGGA-------------CCGgCCCUACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 23646 | 0.68 | 0.500486 |
Target: 5'- gCGGGCCGccuggaGCGCCgccgGGCCcgcgcGGcGGUGGc -3' miRNA: 3'- gGUCCGGCa-----CGCGGa---CCGG-----CC-CUACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 24594 | 0.73 | 0.264439 |
Target: 5'- gCguGGCCGUggaGUGCCUGGCCgccugccgcGGGAuccUGGa -3' miRNA: 3'- -GguCCGGCA---CGCGGACCGG---------CCCU---ACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 24663 | 0.66 | 0.642947 |
Target: 5'- aCCuggcGGCCGUGCcggGgCUGGCCGGa---- -3' miRNA: 3'- -GGu---CCGGCACG---CgGACCGGCCcuacc -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 24805 | 0.67 | 0.575432 |
Target: 5'- gCUGGuGCUGaUGCGCCUGcGCgGGGAccugcgcgUGGc -3' miRNA: 3'- -GGUC-CGGC-ACGCGGAC-CGgCCCU--------ACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 24874 | 0.68 | 0.500486 |
Target: 5'- gCGcGCCGUGaGCCUGgucGCCGGGGcccUGGg -3' miRNA: 3'- gGUcCGGCACgCGGAC---CGGCCCU---ACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 25494 | 0.68 | 0.491403 |
Target: 5'- cUCGGGcCCGcUGCGCCgcgcggcGGCCuGGAUGc -3' miRNA: 3'- -GGUCC-GGC-ACGCGGa------CCGGcCCUACc -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 25592 | 0.68 | 0.509642 |
Target: 5'- aCCuGGCCGcGgGCC-GcGCCGGGGgcgGGc -3' miRNA: 3'- -GGuCCGGCaCgCGGaC-CGGCCCUa--CC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 25691 | 0.67 | 0.594631 |
Target: 5'- gCGGGCCcgccacgGcCGCCUGGgCGGGcaacUGGa -3' miRNA: 3'- gGUCCGGca-----C-GCGGACCgGCCCu---ACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 25945 | 0.7 | 0.397241 |
Target: 5'- gCCGGcagugcGCCGUGCG-CUGGCCGGcGGcgcgGGa -3' miRNA: 3'- -GGUC------CGGCACGCgGACCGGCC-CUa---CC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 26200 | 0.68 | 0.508723 |
Target: 5'- gCCGGGCCGc-CGCCUcgGGCgCGGGcgacgccAUGGc -3' miRNA: 3'- -GGUCCGGCacGCGGA--CCG-GCCC-------UACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 26496 | 0.68 | 0.528158 |
Target: 5'- gCGGGCCGcGCGgggacggugCUGGCCGcGGcgGGc -3' miRNA: 3'- gGUCCGGCaCGCg--------GACCGGC-CCuaCC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 27769 | 0.69 | 0.464631 |
Target: 5'- cCCGGGCUGcGCacGCCa-GCCGGGAcGGg -3' miRNA: 3'- -GGUCCGGCaCG--CGGacCGGCCCUaCC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 28607 | 0.76 | 0.186977 |
Target: 5'- --cGGCCGcGCGCCUGGCCcgacGGGGguccUGGg -3' miRNA: 3'- gguCCGGCaCGCGGACCGG----CCCU----ACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 29993 | 0.68 | 0.500486 |
Target: 5'- -uGGGCCGUGCGCC--GCCccccgacccucuGGGggGGc -3' miRNA: 3'- ggUCCGGCACGCGGacCGG------------CCCuaCC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 30775 | 0.68 | 0.527226 |
Target: 5'- --cGGCCGUGCggGCCggcacGGCCGuGGAcuuuaucUGGa -3' miRNA: 3'- gguCCGGCACG--CGGa----CCGGC-CCU-------ACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 30919 | 0.68 | 0.528158 |
Target: 5'- aCCuGGCCGacggugaggGCGgCgggGGUCGGGcgGGg -3' miRNA: 3'- -GGuCCGGCa--------CGCgGa--CCGGCCCuaCC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 31237 | 0.67 | 0.565884 |
Target: 5'- gCAGcGgCG-GCGCCccguugcgGGCgGGGGUGGg -3' miRNA: 3'- gGUC-CgGCaCGCGGa-------CCGgCCCUACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 31668 | 0.66 | 0.652615 |
Target: 5'- gCCGGGCCc-GCGCCgcccGCCGugccGGUGGa -3' miRNA: 3'- -GGUCCGGcaCGCGGac--CGGCc---CUACC- -5' |
|||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 32307 | 0.66 | 0.662268 |
Target: 5'- cCCGcGCUGcUGCGCCgcgggGGCCGaGGAa-- -3' miRNA: 3'- -GGUcCGGC-ACGCGGa----CCGGC-CCUacc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home