miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 20888 0.67 0.574476
Target:  5'- aCGGGgCGUcuGCGCUUccgugaacccgggGGUgGGGAUGGg -3'
miRNA:   3'- gGUCCgGCA--CGCGGA-------------CCGgCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 23646 0.68 0.500486
Target:  5'- gCGGGCCGccuggaGCGCCgccgGGCCcgcgcGGcGGUGGc -3'
miRNA:   3'- gGUCCGGCa-----CGCGGa---CCGG-----CC-CUACC- -5'
5111 3' -62.8 NC_001798.1 + 24594 0.73 0.264439
Target:  5'- gCguGGCCGUggaGUGCCUGGCCgccugccgcGGGAuccUGGa -3'
miRNA:   3'- -GguCCGGCA---CGCGGACCGG---------CCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 24663 0.66 0.642947
Target:  5'- aCCuggcGGCCGUGCcggGgCUGGCCGGa---- -3'
miRNA:   3'- -GGu---CCGGCACG---CgGACCGGCCcuacc -5'
5111 3' -62.8 NC_001798.1 + 24805 0.67 0.575432
Target:  5'- gCUGGuGCUGaUGCGCCUGcGCgGGGAccugcgcgUGGc -3'
miRNA:   3'- -GGUC-CGGC-ACGCGGAC-CGgCCCU--------ACC- -5'
5111 3' -62.8 NC_001798.1 + 24874 0.68 0.500486
Target:  5'- gCGcGCCGUGaGCCUGgucGCCGGGGcccUGGg -3'
miRNA:   3'- gGUcCGGCACgCGGAC---CGGCCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 25494 0.68 0.491403
Target:  5'- cUCGGGcCCGcUGCGCCgcgcggcGGCCuGGAUGc -3'
miRNA:   3'- -GGUCC-GGC-ACGCGGa------CCGGcCCUACc -5'
5111 3' -62.8 NC_001798.1 + 25592 0.68 0.509642
Target:  5'- aCCuGGCCGcGgGCC-GcGCCGGGGgcgGGc -3'
miRNA:   3'- -GGuCCGGCaCgCGGaC-CGGCCCUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 25691 0.67 0.594631
Target:  5'- gCGGGCCcgccacgGcCGCCUGGgCGGGcaacUGGa -3'
miRNA:   3'- gGUCCGGca-----C-GCGGACCgGCCCu---ACC- -5'
5111 3' -62.8 NC_001798.1 + 25945 0.7 0.397241
Target:  5'- gCCGGcagugcGCCGUGCG-CUGGCCGGcGGcgcgGGa -3'
miRNA:   3'- -GGUC------CGGCACGCgGACCGGCC-CUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 26200 0.68 0.508723
Target:  5'- gCCGGGCCGc-CGCCUcgGGCgCGGGcgacgccAUGGc -3'
miRNA:   3'- -GGUCCGGCacGCGGA--CCG-GCCC-------UACC- -5'
5111 3' -62.8 NC_001798.1 + 26496 0.68 0.528158
Target:  5'- gCGGGCCGcGCGgggacggugCUGGCCGcGGcgGGc -3'
miRNA:   3'- gGUCCGGCaCGCg--------GACCGGC-CCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 27769 0.69 0.464631
Target:  5'- cCCGGGCUGcGCacGCCa-GCCGGGAcGGg -3'
miRNA:   3'- -GGUCCGGCaCG--CGGacCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 28607 0.76 0.186977
Target:  5'- --cGGCCGcGCGCCUGGCCcgacGGGGguccUGGg -3'
miRNA:   3'- gguCCGGCaCGCGGACCGG----CCCU----ACC- -5'
5111 3' -62.8 NC_001798.1 + 29993 0.68 0.500486
Target:  5'- -uGGGCCGUGCGCC--GCCccccgacccucuGGGggGGc -3'
miRNA:   3'- ggUCCGGCACGCGGacCGG------------CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 30775 0.68 0.527226
Target:  5'- --cGGCCGUGCggGCCggcacGGCCGuGGAcuuuaucUGGa -3'
miRNA:   3'- gguCCGGCACG--CGGa----CCGGC-CCU-------ACC- -5'
5111 3' -62.8 NC_001798.1 + 30919 0.68 0.528158
Target:  5'- aCCuGGCCGacggugaggGCGgCgggGGUCGGGcgGGg -3'
miRNA:   3'- -GGuCCGGCa--------CGCgGa--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 31237 0.67 0.565884
Target:  5'- gCAGcGgCG-GCGCCccguugcgGGCgGGGGUGGg -3'
miRNA:   3'- gGUC-CgGCaCGCGGa-------CCGgCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 31668 0.66 0.652615
Target:  5'- gCCGGGCCc-GCGCCgcccGCCGugccGGUGGa -3'
miRNA:   3'- -GGUCCGGcaCGCGGac--CGGCc---CUACC- -5'
5111 3' -62.8 NC_001798.1 + 32307 0.66 0.662268
Target:  5'- cCCGcGCUGcUGCGCCgcgggGGCCGaGGAa-- -3'
miRNA:   3'- -GGUcCGGC-ACGCGGa----CCGGC-CCUacc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.