miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 39560 0.67 0.556378
Target:  5'- cCgGGGCCGUccguccGCGCCgacgCGGGGUGGc -3'
miRNA:   3'- -GgUCCGGCA------CGCGGaccgGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 44383 0.67 0.556378
Target:  5'- uCCAGaguuGCUGUGaCGUg-GGCCGGGAgcaaUGGg -3'
miRNA:   3'- -GGUC----CGGCAC-GCGgaCCGGCCCU----ACC- -5'
5111 3' -62.8 NC_001798.1 + 147024 0.67 0.556378
Target:  5'- gCGGGCCG-GgGCUUGGCCGccgaGGUGc -3'
miRNA:   3'- gGUCCGGCaCgCGGACCGGCc---CUACc -5'
5111 3' -62.8 NC_001798.1 + 40114 0.68 0.537509
Target:  5'- gCCAuGuuGUagGuCGCCggGGCUGGGAUGGc -3'
miRNA:   3'- -GGUcCggCA--C-GCGGa-CCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 53989 0.68 0.536572
Target:  5'- cCUGGGCCaccugacGCGCCUGGCCcaccuguGGGAgaccGGc -3'
miRNA:   3'- -GGUCCGGca-----CGCGGACCGG-------CCCUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 56940 0.68 0.52909
Target:  5'- --cGGCCGUGCacgucgccuuaaacGgCUGGCCcuccagcaccgcgugGGGGUGGa -3'
miRNA:   3'- gguCCGGCACG--------------CgGACCGG---------------CCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 36314 0.68 0.528158
Target:  5'- gCGGGgCGcGgGCCggGGCCGGGGcucgcUGGu -3'
miRNA:   3'- gGUCCgGCaCgCGGa-CCGGCCCU-----ACC- -5'
5111 3' -62.8 NC_001798.1 + 26496 0.68 0.528158
Target:  5'- gCGGGCCGcGCGgggacggugCUGGCCGcGGcgGGc -3'
miRNA:   3'- gGUCCGGCaCGCg--------GACCGGC-CCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 30919 0.68 0.528158
Target:  5'- aCCuGGCCGacggugaggGCGgCgggGGUCGGGcgGGg -3'
miRNA:   3'- -GGuCCGGCa--------CGCgGa--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 30775 0.68 0.527226
Target:  5'- --cGGCCGUGCggGCCggcacGGCCGuGGAcuuuaucUGGa -3'
miRNA:   3'- gguCCGGCACG--CGGa----CCGGC-CCU-------ACC- -5'
5111 3' -62.8 NC_001798.1 + 149656 0.68 0.518867
Target:  5'- -gAGGCCGgGCGCCgGGUCGcGGGccccGGg -3'
miRNA:   3'- ggUCCGGCaCGCGGaCCGGC-CCUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 57159 0.68 0.518867
Target:  5'- gCGGGCUG-GCGCCcgGGCCGGc---- -3'
miRNA:   3'- gGUCCGGCaCGCGGa-CCGGCCcuacc -5'
5111 3' -62.8 NC_001798.1 + 9150 0.68 0.518867
Target:  5'- gCGGGCgCG-GCGCCgcccGcGCCGGGGggcaGGg -3'
miRNA:   3'- gGUCCG-GCaCGCGGa---C-CGGCCCUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 154289 0.68 0.517942
Target:  5'- cCCGGGCCGUGuUGCg-GGCCcucuuaaGGGgcGGc -3'
miRNA:   3'- -GGUCCGGCAC-GCGgaCCGG-------CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 151138 0.68 0.509642
Target:  5'- gCCAGGUcaucguccucguCGUccGUGCCgGGCCacgggGGGGUGGg -3'
miRNA:   3'- -GGUCCG------------GCA--CGCGGaCCGG-----CCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 25592 0.68 0.509642
Target:  5'- aCCuGGCCGcGgGCC-GcGCCGGGGgcgGGc -3'
miRNA:   3'- -GGuCCGGCaCgCGGaC-CGGCCCUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 26200 0.68 0.508723
Target:  5'- gCCGGGCCGc-CGCCUcgGGCgCGGGcgacgccAUGGc -3'
miRNA:   3'- -GGUCCGGCacGCGGA--CCG-GCCC-------UACC- -5'
5111 3' -62.8 NC_001798.1 + 79179 0.68 0.500486
Target:  5'- aCCGccCUGUGCGCCcGGCugCGGGAUGa -3'
miRNA:   3'- -GGUccGGCACGCGGaCCG--GCCCUACc -5'
5111 3' -62.8 NC_001798.1 + 29993 0.68 0.500486
Target:  5'- -uGGGCCGUGCGCC--GCCccccgacccucuGGGggGGc -3'
miRNA:   3'- ggUCCGGCACGCGGacCGG------------CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 24874 0.68 0.500486
Target:  5'- gCGcGCCGUGaGCCUGgucGCCGGGGcccUGGg -3'
miRNA:   3'- gGUcCGGCACgCGGAC---CGGCCCU---ACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.