Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 39560 | 0.67 | 0.556378 |
Target: 5'- cCgGGGCCGUccguccGCGCCgacgCGGGGUGGc -3' miRNA: 3'- -GgUCCGGCA------CGCGGaccgGCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 44383 | 0.67 | 0.556378 |
Target: 5'- uCCAGaguuGCUGUGaCGUg-GGCCGGGAgcaaUGGg -3' miRNA: 3'- -GGUC----CGGCAC-GCGgaCCGGCCCU----ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 147024 | 0.67 | 0.556378 |
Target: 5'- gCGGGCCG-GgGCUUGGCCGccgaGGUGc -3' miRNA: 3'- gGUCCGGCaCgCGGACCGGCc---CUACc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 40114 | 0.68 | 0.537509 |
Target: 5'- gCCAuGuuGUagGuCGCCggGGCUGGGAUGGc -3' miRNA: 3'- -GGUcCggCA--C-GCGGa-CCGGCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 53989 | 0.68 | 0.536572 |
Target: 5'- cCUGGGCCaccugacGCGCCUGGCCcaccuguGGGAgaccGGc -3' miRNA: 3'- -GGUCCGGca-----CGCGGACCGG-------CCCUa---CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 56940 | 0.68 | 0.52909 |
Target: 5'- --cGGCCGUGCacgucgccuuaaacGgCUGGCCcuccagcaccgcgugGGGGUGGa -3' miRNA: 3'- gguCCGGCACG--------------CgGACCGG---------------CCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 36314 | 0.68 | 0.528158 |
Target: 5'- gCGGGgCGcGgGCCggGGCCGGGGcucgcUGGu -3' miRNA: 3'- gGUCCgGCaCgCGGa-CCGGCCCU-----ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 26496 | 0.68 | 0.528158 |
Target: 5'- gCGGGCCGcGCGgggacggugCUGGCCGcGGcgGGc -3' miRNA: 3'- gGUCCGGCaCGCg--------GACCGGC-CCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 30919 | 0.68 | 0.528158 |
Target: 5'- aCCuGGCCGacggugaggGCGgCgggGGUCGGGcgGGg -3' miRNA: 3'- -GGuCCGGCa--------CGCgGa--CCGGCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 30775 | 0.68 | 0.527226 |
Target: 5'- --cGGCCGUGCggGCCggcacGGCCGuGGAcuuuaucUGGa -3' miRNA: 3'- gguCCGGCACG--CGGa----CCGGC-CCU-------ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 149656 | 0.68 | 0.518867 |
Target: 5'- -gAGGCCGgGCGCCgGGUCGcGGGccccGGg -3' miRNA: 3'- ggUCCGGCaCGCGGaCCGGC-CCUa---CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 57159 | 0.68 | 0.518867 |
Target: 5'- gCGGGCUG-GCGCCcgGGCCGGc---- -3' miRNA: 3'- gGUCCGGCaCGCGGa-CCGGCCcuacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 9150 | 0.68 | 0.518867 |
Target: 5'- gCGGGCgCG-GCGCCgcccGcGCCGGGGggcaGGg -3' miRNA: 3'- gGUCCG-GCaCGCGGa---C-CGGCCCUa---CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 154289 | 0.68 | 0.517942 |
Target: 5'- cCCGGGCCGUGuUGCg-GGCCcucuuaaGGGgcGGc -3' miRNA: 3'- -GGUCCGGCAC-GCGgaCCGG-------CCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 151138 | 0.68 | 0.509642 |
Target: 5'- gCCAGGUcaucguccucguCGUccGUGCCgGGCCacgggGGGGUGGg -3' miRNA: 3'- -GGUCCG------------GCA--CGCGGaCCGG-----CCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 25592 | 0.68 | 0.509642 |
Target: 5'- aCCuGGCCGcGgGCC-GcGCCGGGGgcgGGc -3' miRNA: 3'- -GGuCCGGCaCgCGGaC-CGGCCCUa--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 26200 | 0.68 | 0.508723 |
Target: 5'- gCCGGGCCGc-CGCCUcgGGCgCGGGcgacgccAUGGc -3' miRNA: 3'- -GGUCCGGCacGCGGA--CCG-GCCC-------UACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 79179 | 0.68 | 0.500486 |
Target: 5'- aCCGccCUGUGCGCCcGGCugCGGGAUGa -3' miRNA: 3'- -GGUccGGCACGCGGaCCG--GCCCUACc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 29993 | 0.68 | 0.500486 |
Target: 5'- -uGGGCCGUGCGCC--GCCccccgacccucuGGGggGGc -3' miRNA: 3'- ggUCCGGCACGCGGacCGG------------CCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 24874 | 0.68 | 0.500486 |
Target: 5'- gCGcGCCGUGaGCCUGgucGCCGGGGcccUGGg -3' miRNA: 3'- gGUcCGGCACgCGGAC---CGGCCCU---ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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