miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 5' -55.2 NC_001798.1 + 144095 1.08 0.003822
Target:  5'- gGUCCUGCCCGAUGAUAACCACGCGCAc -3'
miRNA:   3'- -CAGGACGGGCUACUAUUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 95104 0.77 0.382614
Target:  5'- -aCCUgcugcgGCCCG-UGAUGGCCGCGCGCc -3'
miRNA:   3'- caGGA------CGGGCuACUAUUGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 116925 0.76 0.391046
Target:  5'- cGUCCUGCCCGu------CCACGCGCu -3'
miRNA:   3'- -CAGGACGGGCuacuauuGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 2131 0.76 0.400459
Target:  5'- gGUCCUcGCCCGGcagcggcgaguagagGAUcACCACGCGCAc -3'
miRNA:   3'- -CAGGA-CGGGCUa--------------CUAuUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 103147 0.73 0.581194
Target:  5'- -gCC-GCCCGAUGGcgcacagGGCCACGUGCGc -3'
miRNA:   3'- caGGaCGGGCUACUa------UUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 86230 0.72 0.653424
Target:  5'- -aCCUggGCCCGcUGAUGGCCAcCGUGCu -3'
miRNA:   3'- caGGA--CGGGCuACUAUUGGU-GCGCGu -5'
5111 5' -55.2 NC_001798.1 + 28372 0.71 0.694492
Target:  5'- cGUCCccGCCCGcgGAcgcGCCGCGCGgGa -3'
miRNA:   3'- -CAGGa-CGGGCuaCUau-UGGUGCGCgU- -5'
5111 5' -55.2 NC_001798.1 + 140835 0.71 0.704649
Target:  5'- cGUCCUcaacaGCCaGGUcgcGGUGACCGCGCGCc -3'
miRNA:   3'- -CAGGA-----CGGgCUA---CUAUUGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 100180 0.7 0.724765
Target:  5'- -aCCgucgGCCgGcgGGUGAgCGCGCGCAu -3'
miRNA:   3'- caGGa---CGGgCuaCUAUUgGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 43693 0.7 0.763945
Target:  5'- gGUCacgGCCCGGaGAUGcgugGCCAgGCGCGg -3'
miRNA:   3'- -CAGga-CGGGCUaCUAU----UGGUgCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 75299 0.69 0.773465
Target:  5'- -cCCUgGCCCGcgaGGUGGCCGCGUGUu -3'
miRNA:   3'- caGGA-CGGGCua-CUAUUGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 113297 0.69 0.782856
Target:  5'- gGUCCUcaagccGCUgGAgcUGGUGGCCGCGgGCAu -3'
miRNA:   3'- -CAGGA------CGGgCU--ACUAUUGGUGCgCGU- -5'
5111 5' -55.2 NC_001798.1 + 51303 0.69 0.801214
Target:  5'- -aCCUggGCCCGAUGGac-CCACGCGaCGu -3'
miRNA:   3'- caGGA--CGGGCUACUauuGGUGCGC-GU- -5'
5111 5' -55.2 NC_001798.1 + 71965 0.69 0.804813
Target:  5'- cGUgCUgGCCCuGGUGGUcggggacgcgcugagGGCCACGUGCAa -3'
miRNA:   3'- -CAgGA-CGGG-CUACUA---------------UUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 131561 0.69 0.809276
Target:  5'- -cCCgacgGCCCGGUGcguaacuGUGGuCCGCGCGCc -3'
miRNA:   3'- caGGa---CGGGCUAC-------UAUU-GGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 25655 0.69 0.818947
Target:  5'- uGUCCUGCCUGcUGGcGGCCcUGgGCAa -3'
miRNA:   3'- -CAGGACGGGCuACUaUUGGuGCgCGU- -5'
5111 5' -55.2 NC_001798.1 + 62615 0.69 0.818947
Target:  5'- --gCUGCCCGAUccGAUGACCAuCGC-CGa -3'
miRNA:   3'- cagGACGGGCUA--CUAUUGGU-GCGcGU- -5'
5111 5' -55.2 NC_001798.1 + 125064 0.68 0.827558
Target:  5'- -gUCUGCCCGugGGUGGCCACGUcCAc -3'
miRNA:   3'- caGGACGGGCuaCUAUUGGUGCGcGU- -5'
5111 5' -55.2 NC_001798.1 + 76615 0.68 0.844228
Target:  5'- uGUCC--CCCGA----GGCCACGCGCAu -3'
miRNA:   3'- -CAGGacGGGCUacuaUUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 65327 0.68 0.84747
Target:  5'- cGUCCUuaaacaugaugaaggGgcuUCCGGUGGUGGCCGCGCuGCGc -3'
miRNA:   3'- -CAGGA---------------C---GGGCUACUAUUGGUGCG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.