Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 5' | -55.2 | NC_001798.1 | + | 2131 | 0.76 | 0.400459 |
Target: 5'- gGUCCUcGCCCGGcagcggcgaguagagGAUcACCACGCGCAc -3' miRNA: 3'- -CAGGA-CGGGCUa--------------CUAuUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 2173 | 0.67 | 0.88931 |
Target: 5'- cGUCCU-CCgGGUcGGgcACCugGCGCAu -3' miRNA: 3'- -CAGGAcGGgCUA-CUauUGGugCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 25655 | 0.69 | 0.818947 |
Target: 5'- uGUCCUGCCUGcUGGcGGCCcUGgGCAa -3' miRNA: 3'- -CAGGACGGGCuACUaUUGGuGCgCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 26708 | 0.68 | 0.851476 |
Target: 5'- cGUCUgugcGCCuuuaagacagacgCGgcGAUGGCCGCGCGCGu -3' miRNA: 3'- -CAGGa---CGG-------------GCuaCUAUUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 27477 | 0.67 | 0.901903 |
Target: 5'- cGUCCUGCCgCGcgGGggcgGgcgcgggaaaaaaGCCGCGCGgGg -3' miRNA: 3'- -CAGGACGG-GCuaCUa---U-------------UGGUGCGCgU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 28372 | 0.71 | 0.694492 |
Target: 5'- cGUCCccGCCCGcgGAcgcGCCGCGCGgGa -3' miRNA: 3'- -CAGGa-CGGGCuaCUau-UGGUGCGCgU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 28589 | 0.66 | 0.920598 |
Target: 5'- aUCUggugGCCUGGgaGAcGGCCGCGCGCc -3' miRNA: 3'- cAGGa---CGGGCUa-CUaUUGGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 39059 | 0.68 | 0.860112 |
Target: 5'- -gCCaggGCCuCGAUGAgauuuuCCugGCGCAg -3' miRNA: 3'- caGGa--CGG-GCUACUauu---GGugCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 41906 | 0.68 | 0.854645 |
Target: 5'- cGUCCUuaaugcgGCCCGGcgaacggacacggccUGAUAuucCCGCGCGUg -3' miRNA: 3'- -CAGGA-------CGGGCU---------------ACUAUu--GGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 43693 | 0.7 | 0.763945 |
Target: 5'- gGUCacgGCCCGGaGAUGcgugGCCAgGCGCGg -3' miRNA: 3'- -CAGga-CGGGCUaCUAU----UGGUgCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 44616 | 0.67 | 0.873689 |
Target: 5'- cUCCUGUUCGGUGGgcgcgcccguggGGCCAUuggGCGCAu -3' miRNA: 3'- cAGGACGGGCUACUa-----------UUGGUG---CGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 47573 | 0.66 | 0.920598 |
Target: 5'- aGUCgUGUCCGcgGGaagcGCCGCGCGgGa -3' miRNA: 3'- -CAGgACGGGCuaCUau--UGGUGCGCgU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 50090 | 0.66 | 0.926131 |
Target: 5'- cUCCUGCggaggCCGGgcUGGUGGCgC-CGCGCAu -3' miRNA: 3'- cAGGACG-----GGCU--ACUAUUG-GuGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 51303 | 0.69 | 0.801214 |
Target: 5'- -aCCUggGCCCGAUGGac-CCACGCGaCGu -3' miRNA: 3'- caGGA--CGGGCUACUauuGGUGCGC-GU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 52574 | 0.67 | 0.88931 |
Target: 5'- -gCCUGgCCGAcacGGUggUCGCGUGCGu -3' miRNA: 3'- caGGACgGGCUa--CUAuuGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 52819 | 0.66 | 0.914821 |
Target: 5'- uUCCUGCUCGAa---GACCugGCGg- -3' miRNA: 3'- cAGGACGGGCUacuaUUGGugCGCgu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 54372 | 0.68 | 0.860112 |
Target: 5'- cGUCCgGCCCaccgGggGGCCGCgGCGCGg -3' miRNA: 3'- -CAGGaCGGGcua-CuaUUGGUG-CGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 54782 | 0.67 | 0.875154 |
Target: 5'- cUgCUGCCCGAcGAUGAcgccgccaugcCCGCGgGCGu -3' miRNA: 3'- cAgGACGGGCUaCUAUU-----------GGUGCgCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 62615 | 0.69 | 0.818947 |
Target: 5'- --gCUGCCCGAUccGAUGACCAuCGC-CGa -3' miRNA: 3'- cagGACGGGCUA--CUAUUGGU-GCGcGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 65327 | 0.68 | 0.84747 |
Target: 5'- cGUCCUuaaacaugaugaaggGgcuUCCGGUGGUGGCCGCGCuGCGc -3' miRNA: 3'- -CAGGA---------------C---GGGCUACUAUUGGUGCG-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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