miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5112 3' -50.4 NC_001798.1 + 21783 0.66 0.995263
Target:  5'- aGGAACGGcccgcccCCCGUCCGGGCccgccucGGGGc -3'
miRNA:   3'- gUUUUGCCa------GGGUAGGUUCGaa-----CCUC- -5'
5112 3' -50.4 NC_001798.1 + 15703 0.66 0.995263
Target:  5'- gGGGGCGGUCgguUCCGcGCUUGGGu -3'
miRNA:   3'- gUUUUGCCAGgguAGGUuCGAACCUc -5'
5112 3' -50.4 NC_001798.1 + 118336 0.66 0.994137
Target:  5'- gAGGGCaGGUCCCAauaaaacccagacCCGAGCUccgGGGGa -3'
miRNA:   3'- gUUUUG-CCAGGGUa------------GGUUCGAa--CCUC- -5'
5112 3' -50.4 NC_001798.1 + 90845 0.67 0.990751
Target:  5'- --uGACGGUCCCGgcgggcgugauggcgUCCAuaaaucGCUcgUGGAGc -3'
miRNA:   3'- guuUUGCCAGGGU---------------AGGUu-----CGA--ACCUC- -5'
5112 3' -50.4 NC_001798.1 + 111759 0.67 0.990237
Target:  5'- ----cCGGUCCCggCCAucGgUUGGGGg -3'
miRNA:   3'- guuuuGCCAGGGuaGGUu-CgAACCUC- -5'
5112 3' -50.4 NC_001798.1 + 102615 0.67 0.987955
Target:  5'- aGAGGCGGggauccacaaauaacUCCCGUcgCCGGGCggcGGAGg -3'
miRNA:   3'- gUUUUGCC---------------AGGGUA--GGUUCGaa-CCUC- -5'
5112 3' -50.4 NC_001798.1 + 32252 0.67 0.987324
Target:  5'- gGGAGCGucgcGUCCgCGUCCGGcGCUggGGAGa -3'
miRNA:   3'- gUUUUGC----CAGG-GUAGGUU-CGAa-CCUC- -5'
5112 3' -50.4 NC_001798.1 + 33799 0.67 0.987324
Target:  5'- ---uGCGGggagacUCCCAUCgGGGCgaGGGGg -3'
miRNA:   3'- guuuUGCC------AGGGUAGgUUCGaaCCUC- -5'
5112 3' -50.4 NC_001798.1 + 83837 0.68 0.979537
Target:  5'- aCGGGcCGGUcCCCGUCCGGGCggcgcUGGcGGg -3'
miRNA:   3'- -GUUUuGCCA-GGGUAGGUUCGa----ACC-UC- -5'
5112 3' -50.4 NC_001798.1 + 73361 0.68 0.977129
Target:  5'- gCGAGACGGUCCCuuggcCCAAcacccccgUGGAGg -3'
miRNA:   3'- -GUUUUGCCAGGGua---GGUUcga-----ACCUC- -5'
5112 3' -50.4 NC_001798.1 + 63932 0.69 0.970808
Target:  5'- gAAAGCGGUagaagccgagcucgCCC-UCggaGAGCUUGGAGa -3'
miRNA:   3'- gUUUUGCCA--------------GGGuAGg--UUCGAACCUC- -5'
5112 3' -50.4 NC_001798.1 + 48643 0.7 0.955805
Target:  5'- aGGGGCGGgaggaaggacacgccUCCCuUCCGAGCgcgGGGGa -3'
miRNA:   3'- gUUUUGCC---------------AGGGuAGGUUCGaa-CCUC- -5'
5112 3' -50.4 NC_001798.1 + 143854 1.09 0.009234
Target:  5'- aCAAAACGGUCCCAUCCAAGCUUGGAGu -3'
miRNA:   3'- -GUUUUGCCAGGGUAGGUUCGAACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.