miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5112 5' -60.9 NC_001798.1 + 143891 1.08 0.001444
Target:  5'- cCGCCCCGCGCUUGACGGUCAGGGUCGu -3'
miRNA:   3'- -GCGGGGCGCGAACUGCCAGUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 7789 0.8 0.128518
Target:  5'- cCGCCCC-CGC-UGGCGGgagcCAGGGUCGg -3'
miRNA:   3'- -GCGGGGcGCGaACUGCCa---GUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 135357 0.76 0.234917
Target:  5'- uGCCCCGCGCUccggcagcUGcuCGG-CGGGGUCa -3'
miRNA:   3'- gCGGGGCGCGA--------ACu-GCCaGUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 52602 0.74 0.28207
Target:  5'- gGCCcuggCCGCGUUUGACGG-C-GGGUCGa -3'
miRNA:   3'- gCGG----GGCGCGAACUGCCaGuCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 31140 0.73 0.322148
Target:  5'- gCGCCCCgGCGCgggggcGGCGGUgCGGGGgCGa -3'
miRNA:   3'- -GCGGGG-CGCGaa----CUGCCA-GUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 107444 0.73 0.33353
Target:  5'- gCGaCCCCGCGCcccgaccccgagGACGGcgCGGGGUCu -3'
miRNA:   3'- -GC-GGGGCGCGaa----------CUGCCa-GUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 29617 0.73 0.358684
Target:  5'- aGCCCCGUGU--GACGGUC-GGGcCGc -3'
miRNA:   3'- gCGGGGCGCGaaCUGCCAGuCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 75994 0.73 0.358684
Target:  5'- cCGCCCCGgGCgccGGCGG-CAGGGcCc -3'
miRNA:   3'- -GCGGGGCgCGaa-CUGCCaGUCCCaGc -5'
5112 5' -60.9 NC_001798.1 + 118608 0.72 0.389935
Target:  5'- gCGCCCCgaugccgcgGCGCUgcaGCGGUgCgAGGGUCGa -3'
miRNA:   3'- -GCGGGG---------CGCGAac-UGCCA-G-UCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 36408 0.71 0.457513
Target:  5'- gGCCCCccugccGgGCggGGCGGUggggCGGGGUCGg -3'
miRNA:   3'- gCGGGG------CgCGaaCUGCCA----GUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 28824 0.7 0.466397
Target:  5'- gGgCCCGgGCcgucgGGCGGUCuAGGGUUGa -3'
miRNA:   3'- gCgGGGCgCGaa---CUGCCAG-UCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 43658 0.7 0.466397
Target:  5'- uGCUCCGUGCUggccGCGGggcUGGGGUCGu -3'
miRNA:   3'- gCGGGGCGCGAac--UGCCa--GUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 9159 0.7 0.484429
Target:  5'- gCGCcgCCCGCGCcgGGgGG-CAGGGUCu -3'
miRNA:   3'- -GCG--GGGCGCGaaCUgCCaGUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 36141 0.7 0.484429
Target:  5'- cCGCCggugggGCGCggcGGCGGUCGGGGUgGg -3'
miRNA:   3'- -GCGGgg----CGCGaa-CUGCCAGUCCCAgC- -5'
5112 5' -60.9 NC_001798.1 + 55792 0.69 0.521444
Target:  5'- cCGCCUgcuCGUGCUcGACGGgggUGGGGUCc -3'
miRNA:   3'- -GCGGG---GCGCGAaCUGCCa--GUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 128429 0.69 0.521444
Target:  5'- cCGCCuCCaCGCUgcgGugGGgcgcgCAGGGUCc -3'
miRNA:   3'- -GCGG-GGcGCGAa--CugCCa----GUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 108555 0.69 0.530873
Target:  5'- gCGCCuCCGCGCUguuGCGGUCccGGGcCu -3'
miRNA:   3'- -GCGG-GGCGCGAac-UGCCAGu-CCCaGc -5'
5112 5' -60.9 NC_001798.1 + 39431 0.69 0.530873
Target:  5'- cCGUCCgCGUGCggGGgGGUCAGGGa-- -3'
miRNA:   3'- -GCGGG-GCGCGaaCUgCCAGUCCCagc -5'
5112 5' -60.9 NC_001798.1 + 84732 0.69 0.540363
Target:  5'- uGUCCUGCGUaUGugGGgcggCGGGGcCGu -3'
miRNA:   3'- gCGGGGCGCGaACugCCa---GUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 1960 0.69 0.546084
Target:  5'- aCGCCCUGCGCgcccagcgccgaGAC-GUCGGGGgcgCGg -3'
miRNA:   3'- -GCGGGGCGCGaa----------CUGcCAGUCCCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.