miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5112 5' -60.9 NC_001798.1 + 1623 0.68 0.578836
Target:  5'- gGCCCCGCggcagaggcgcaGCggcGGCGcGUCGGGGUa- -3'
miRNA:   3'- gCGGGGCG------------CGaa-CUGC-CAGUCCCAgc -5'
5112 5' -60.9 NC_001798.1 + 1960 0.69 0.546084
Target:  5'- aCGCCCUGCGCgcccagcgccgaGAC-GUCGGGGgcgCGg -3'
miRNA:   3'- -GCGGGGCGCGaa----------CUGcCAGUCCCa--GC- -5'
5112 5' -60.9 NC_001798.1 + 2436 0.67 0.685296
Target:  5'- gGCCCCG-GCggcUGGCGG-CGccagccgcccugcGGGUCGg -3'
miRNA:   3'- gCGGGGCgCGa--ACUGCCaGU-------------CCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 2552 0.67 0.686266
Target:  5'- gGCCCC-CGCgggaggGGCGGccgCGGGG-CGg -3'
miRNA:   3'- gCGGGGcGCGaa----CUGCCa--GUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 4840 0.67 0.666815
Target:  5'- gGCCgCGCgGCggggcGACGGUCcGGGuUCGg -3'
miRNA:   3'- gCGGgGCG-CGaa---CUGCCAGuCCC-AGC- -5'
5112 5' -60.9 NC_001798.1 + 7789 0.8 0.128518
Target:  5'- cCGCCCC-CGC-UGGCGGgagcCAGGGUCGg -3'
miRNA:   3'- -GCGGGGcGCGaACUGCCa---GUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 9159 0.7 0.484429
Target:  5'- gCGCcgCCCGCGCcgGGgGG-CAGGGUCu -3'
miRNA:   3'- -GCG--GGGCGCGaaCUgCCaGUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 10356 0.66 0.74709
Target:  5'- aCGCCCgCGuCGuCUucuucgucguagucgUcGGgGGUCGGGGUCGg -3'
miRNA:   3'- -GCGGG-GC-GC-GA---------------A-CUgCCAGUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 10880 0.66 0.72839
Target:  5'- gGCCCCGCGagccauguucgggUGGCaggagccgucGGUCGGGGcagaUCGg -3'
miRNA:   3'- gCGGGGCGCga-----------ACUG----------CCAGUCCC----AGC- -5'
5112 5' -60.9 NC_001798.1 + 15332 0.67 0.683357
Target:  5'- gGCCCCgGCGCgguagcggggggcgaGGCGGUgAGGGgggaaUCGg -3'
miRNA:   3'- gCGGGG-CGCGaa-------------CUGCCAgUCCC-----AGC- -5'
5112 5' -60.9 NC_001798.1 + 15440 0.68 0.578836
Target:  5'- gGCCCCGgaguCGUggGGCGG--GGGGUCGc -3'
miRNA:   3'- gCGGGGC----GCGaaCUGCCagUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 24507 0.66 0.743378
Target:  5'- cCGCCuCCGCGC----CGGcCGGGGcCGa -3'
miRNA:   3'- -GCGG-GGCGCGaacuGCCaGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 28824 0.7 0.466397
Target:  5'- gGgCCCGgGCcgucgGGCGGUCuAGGGUUGa -3'
miRNA:   3'- gCgGGGCgCGaa---CUGCCAG-UCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 29617 0.73 0.358684
Target:  5'- aGCCCCGUGU--GACGGUC-GGGcCGc -3'
miRNA:   3'- gCGGGGCGCGaaCUGCCAGuCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 30830 0.66 0.752631
Target:  5'- gGCCCCGCGCUcccugucgcUGGgGGgacaCAcGGUCc -3'
miRNA:   3'- gCGGGGCGCGA---------ACUgCCa---GUcCCAGc -5'
5112 5' -60.9 NC_001798.1 + 31140 0.73 0.322148
Target:  5'- gCGCCCCgGCGCgggggcGGCGGUgCGGGGgCGa -3'
miRNA:   3'- -GCGGGG-CGCGaa----CUGCCA-GUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 31246 0.68 0.598304
Target:  5'- gCGCCCCGUugcggGCggggGugGGaUCuGGGUCu -3'
miRNA:   3'- -GCGGGGCG-----CGaa--CugCC-AGuCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 31950 0.67 0.651176
Target:  5'- cCGCCCCGCGCUcGccccucgccccccagGgGGUgGGGGcCa -3'
miRNA:   3'- -GCGGGGCGCGAaC---------------UgCCAgUCCCaGc -5'
5112 5' -60.9 NC_001798.1 + 36012 0.66 0.737782
Target:  5'- aCGCCCCccaccGCGcCUuggcuguuuggggggUGGCGG-CGGuGGUCGg -3'
miRNA:   3'- -GCGGGG-----CGC-GA---------------ACUGCCaGUC-CCAGC- -5'
5112 5' -60.9 NC_001798.1 + 36141 0.7 0.484429
Target:  5'- cCGCCggugggGCGCggcGGCGGUCGGGGUgGg -3'
miRNA:   3'- -GCGGgg----CGCGaa-CUGCCAGUCCCAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.