miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5112 5' -60.9 NC_001798.1 + 82280 0.67 0.657047
Target:  5'- uGCCCCGagcgaGCcuUUGuGCGGUU-GGGUCGu -3'
miRNA:   3'- gCGGGGCg----CG--AAC-UGCCAGuCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 40858 0.67 0.657047
Target:  5'- aGCCCCGcCGCagGAUGaaauacagcuccGUCAGGG-CGa -3'
miRNA:   3'- gCGGGGC-GCGaaCUGC------------CAGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 31950 0.67 0.651176
Target:  5'- cCGCCCCGCGCUcGccccucgccccccagGgGGUgGGGGcCa -3'
miRNA:   3'- -GCGGGGCGCGAaC---------------UgCCAgUCCCaGc -5'
5112 5' -60.9 NC_001798.1 + 36250 0.67 0.64726
Target:  5'- cCGCCCgCGCGCUccugUGugGacccCGGGGUgGg -3'
miRNA:   3'- -GCGGG-GCGCGA----ACugCca--GUCCCAgC- -5'
5112 5' -60.9 NC_001798.1 + 145818 0.67 0.64726
Target:  5'- aCGCgg-GCGCggcGGCGGUCGGGGUgGg -3'
miRNA:   3'- -GCGgggCGCGaa-CUGCCAGUCCCAgC- -5'
5112 5' -60.9 NC_001798.1 + 41458 0.67 0.637463
Target:  5'- uGCCCCGC-CggggggGGCGGUCGGcGGg-- -3'
miRNA:   3'- gCGGGGCGcGaa----CUGCCAGUC-CCagc -5'
5112 5' -60.9 NC_001798.1 + 102376 0.68 0.627662
Target:  5'- aGCCCaCcCGCcUGGCGGUCGGcGG-CGa -3'
miRNA:   3'- gCGGG-GcGCGaACUGCCAGUC-CCaGC- -5'
5112 5' -60.9 NC_001798.1 + 85269 0.68 0.621782
Target:  5'- gGCCgCGCGCgaggcuucgggggGGCGGgggcCGGGGUCc -3'
miRNA:   3'- gCGGgGCGCGaa-----------CUGCCa---GUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 150903 0.68 0.617864
Target:  5'- cCGcCCCCGCGCcggGGCGcucuUCGGGGggCGg -3'
miRNA:   3'- -GC-GGGGCGCGaa-CUGCc---AGUCCCa-GC- -5'
5112 5' -60.9 NC_001798.1 + 121292 0.68 0.608076
Target:  5'- cCGCCCCGaCGgUggGGCGGccgcgaacuUCcGGGUCGa -3'
miRNA:   3'- -GCGGGGC-GCgAa-CUGCC---------AGuCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 86246 0.68 0.608076
Target:  5'- gGCCaCCGUGCUgaaGcACGGcCGGGGgcgCGg -3'
miRNA:   3'- gCGG-GGCGCGAa--C-UGCCaGUCCCa--GC- -5'
5112 5' -60.9 NC_001798.1 + 51988 0.68 0.605142
Target:  5'- gGCCCCGaCGCc--GCGGUCuuucgcaguucgcuGGGGUCc -3'
miRNA:   3'- gCGGGGC-GCGaacUGCCAG--------------UCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 31246 0.68 0.598304
Target:  5'- gCGCCCCGUugcggGCggggGugGGaUCuGGGUCu -3'
miRNA:   3'- -GCGGGGCG-----CGaa--CugCC-AGuCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 42862 0.68 0.578836
Target:  5'- gCGCCCCGCGCcuaaagUGACc--CAGGGccUCGu -3'
miRNA:   3'- -GCGGGGCGCGa-----ACUGccaGUCCC--AGC- -5'
5112 5' -60.9 NC_001798.1 + 15440 0.68 0.578836
Target:  5'- gGCCCCGgaguCGUggGGCGG--GGGGUCGc -3'
miRNA:   3'- gCGGGGC----GCGaaCUGCCagUCCCAGC- -5'
5112 5' -60.9 NC_001798.1 + 1623 0.68 0.578836
Target:  5'- gGCCCCGCggcagaggcgcaGCggcGGCGcGUCGGGGUa- -3'
miRNA:   3'- gCGGGGCG------------CGaa-CUGC-CAGUCCCAgc -5'
5112 5' -60.9 NC_001798.1 + 122795 0.69 0.570118
Target:  5'- aCGCCCUggccgugcugGCGCaucugggcggccagGGCGGUCGGGGgCGg -3'
miRNA:   3'- -GCGGGG----------CGCGaa------------CUGCCAGUCCCaGC- -5'
5112 5' -60.9 NC_001798.1 + 76584 0.69 0.559507
Target:  5'- gGCCCCGCGCcguacgucGACGGgggCGGGcuGUCc -3'
miRNA:   3'- gCGGGGCGCGaa------CUGCCa--GUCC--CAGc -5'
5112 5' -60.9 NC_001798.1 + 69241 0.69 0.559507
Target:  5'- gGCUCCGCGUUUGGuuggcagagauCcGUCAGGGUUa -3'
miRNA:   3'- gCGGGGCGCGAACU-----------GcCAGUCCCAGc -5'
5112 5' -60.9 NC_001798.1 + 39991 0.69 0.549909
Target:  5'- -uCCCCGCuGCUgu-CGGacUCGGGGUCGu -3'
miRNA:   3'- gcGGGGCG-CGAacuGCC--AGUCCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.