Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5112 | 5' | -60.9 | NC_001798.1 | + | 84732 | 0.69 | 0.540363 |
Target: 5'- uGUCCUGCGUaUGugGGgcggCGGGGcCGu -3' miRNA: 3'- gCGGGGCGCGaACugCCa---GUCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 1960 | 0.69 | 0.546084 |
Target: 5'- aCGCCCUGCGCgcccagcgccgaGAC-GUCGGGGgcgCGg -3' miRNA: 3'- -GCGGGGCGCGaa----------CUGcCAGUCCCa--GC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 39991 | 0.69 | 0.549909 |
Target: 5'- -uCCCCGCuGCUgu-CGGacUCGGGGUCGu -3' miRNA: 3'- gcGGGGCG-CGAacuGCC--AGUCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 69241 | 0.69 | 0.559507 |
Target: 5'- gGCUCCGCGUUUGGuuggcagagauCcGUCAGGGUUa -3' miRNA: 3'- gCGGGGCGCGAACU-----------GcCAGUCCCAGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 76584 | 0.69 | 0.559507 |
Target: 5'- gGCCCCGCGCcguacgucGACGGgggCGGGcuGUCc -3' miRNA: 3'- gCGGGGCGCGaa------CUGCCa--GUCC--CAGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 122795 | 0.69 | 0.570118 |
Target: 5'- aCGCCCUggccgugcugGCGCaucugggcggccagGGCGGUCGGGGgCGg -3' miRNA: 3'- -GCGGGG----------CGCGaa------------CUGCCAGUCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 36141 | 0.7 | 0.484429 |
Target: 5'- cCGCCggugggGCGCggcGGCGGUCGGGGUgGg -3' miRNA: 3'- -GCGGgg----CGCGaa-CUGCCAGUCCCAgC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 9159 | 0.7 | 0.484429 |
Target: 5'- gCGCcgCCCGCGCcgGGgGG-CAGGGUCu -3' miRNA: 3'- -GCG--GGGCGCGaaCUgCCaGUCCCAGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 43658 | 0.7 | 0.466397 |
Target: 5'- uGCUCCGUGCUggccGCGGggcUGGGGUCGu -3' miRNA: 3'- gCGGGGCGCGAac--UGCCa--GUCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 28824 | 0.7 | 0.466397 |
Target: 5'- gGgCCCGgGCcgucgGGCGGUCuAGGGUUGa -3' miRNA: 3'- gCgGGGCgCGaa---CUGCCAG-UCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 36408 | 0.71 | 0.457513 |
Target: 5'- gGCCCCccugccGgGCggGGCGGUggggCGGGGUCGg -3' miRNA: 3'- gCGGGG------CgCGaaCUGCCA----GUCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 118608 | 0.72 | 0.389935 |
Target: 5'- gCGCCCCgaugccgcgGCGCUgcaGCGGUgCgAGGGUCGa -3' miRNA: 3'- -GCGGGG---------CGCGAac-UGCCA-G-UCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 75994 | 0.73 | 0.358684 |
Target: 5'- cCGCCCCGgGCgccGGCGG-CAGGGcCc -3' miRNA: 3'- -GCGGGGCgCGaa-CUGCCaGUCCCaGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 29617 | 0.73 | 0.358684 |
Target: 5'- aGCCCCGUGU--GACGGUC-GGGcCGc -3' miRNA: 3'- gCGGGGCGCGaaCUGCCAGuCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 107444 | 0.73 | 0.33353 |
Target: 5'- gCGaCCCCGCGCcccgaccccgagGACGGcgCGGGGUCu -3' miRNA: 3'- -GC-GGGGCGCGaa----------CUGCCa-GUCCCAGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 31140 | 0.73 | 0.322148 |
Target: 5'- gCGCCCCgGCGCgggggcGGCGGUgCGGGGgCGa -3' miRNA: 3'- -GCGGGG-CGCGaa----CUGCCA-GUCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 52602 | 0.74 | 0.28207 |
Target: 5'- gGCCcuggCCGCGUUUGACGG-C-GGGUCGa -3' miRNA: 3'- gCGG----GGCGCGAACUGCCaGuCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 135357 | 0.76 | 0.234917 |
Target: 5'- uGCCCCGCGCUccggcagcUGcuCGG-CGGGGUCa -3' miRNA: 3'- gCGGGGCGCGA--------ACu-GCCaGUCCCAGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 7789 | 0.8 | 0.128518 |
Target: 5'- cCGCCCC-CGC-UGGCGGgagcCAGGGUCGg -3' miRNA: 3'- -GCGGGGcGCGaACUGCCa---GUCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 143891 | 1.08 | 0.001444 |
Target: 5'- cCGCCCCGCGCUUGACGGUCAGGGUCGu -3' miRNA: 3'- -GCGGGGCGCGAACUGCCAGUCCCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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