miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5113 3' -53.5 NC_001798.1 + 35569 0.66 0.973196
Target:  5'- gGCCCCGGAgcccgCGGCGcugcUCggcugcgGCCGc -3'
miRNA:   3'- -UGGGGCCUaca--GCCGU----AGaaua---UGGC- -5'
5113 3' -53.5 NC_001798.1 + 128071 0.66 0.970655
Target:  5'- cCCCCGGAccccgacccgaugugGUCGGCGUCggcgauCCc -3'
miRNA:   3'- uGGGGCCUa--------------CAGCCGUAGaauau-GGc -5'
5113 3' -53.5 NC_001798.1 + 38720 0.66 0.967322
Target:  5'- gGCCCCcgGGAUGUaaaaGuGCAUCgucucGCCGg -3'
miRNA:   3'- -UGGGG--CCUACAg---C-CGUAGaaua-UGGC- -5'
5113 3' -53.5 NC_001798.1 + 117190 0.66 0.964066
Target:  5'- cACCCCGGGU-UCGGguUC----ACCGu -3'
miRNA:   3'- -UGGGGCCUAcAGCCguAGaauaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 4741 0.66 0.960947
Target:  5'- uCCCCGGAcgccggggccgccucGUCGGCAUCggc-AUCGg -3'
miRNA:   3'- uGGGGCCUa--------------CAGCCGUAGaauaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 24408 0.66 0.96059
Target:  5'- uGCCgUCGGcgG-CGGCGUCgccgGCCGa -3'
miRNA:   3'- -UGG-GGCCuaCaGCCGUAGaauaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 148841 0.67 0.956888
Target:  5'- gGCCUCGGGggUGggggCGGCuUCUcGUGCCc -3'
miRNA:   3'- -UGGGGCCU--ACa---GCCGuAGAaUAUGGc -5'
5113 3' -53.5 NC_001798.1 + 102301 0.67 0.952956
Target:  5'- uACUCCGGcugcuccaccucGUGUCGGCGgcgCUUc-GCCGa -3'
miRNA:   3'- -UGGGGCC------------UACAGCCGUa--GAAuaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 74767 0.67 0.948789
Target:  5'- gGCCCCGGAcGccgCGGCcUCggGUccACCGc -3'
miRNA:   3'- -UGGGGCCUaCa--GCCGuAGaaUA--UGGC- -5'
5113 3' -53.5 NC_001798.1 + 45467 0.67 0.944385
Target:  5'- aGCCCCGGAgguugcGUCGGUcccaGUCacccacGCCGg -3'
miRNA:   3'- -UGGGGCCUa-----CAGCCG----UAGaaua--UGGC- -5'
5113 3' -53.5 NC_001798.1 + 121364 0.68 0.934852
Target:  5'- cACCCCGuGgcGuUCGGCGUUUgccgccuacGUGCCGg -3'
miRNA:   3'- -UGGGGC-CuaC-AGCCGUAGAa--------UAUGGC- -5'
5113 3' -53.5 NC_001798.1 + 89466 0.68 0.934852
Target:  5'- cGCCCCuGGGUGUCcGGCAggaugaagcccuUCUg--GCCc -3'
miRNA:   3'- -UGGGG-CCUACAG-CCGU------------AGAauaUGGc -5'
5113 3' -53.5 NC_001798.1 + 3961 0.68 0.929721
Target:  5'- gGCgCCGGAggccgcGUCGGCGUCcagcucgACCGc -3'
miRNA:   3'- -UGgGGCCUa-----CAGCCGUAGaaua---UGGC- -5'
5113 3' -53.5 NC_001798.1 + 23573 0.68 0.924344
Target:  5'- gGCCCCGGggG-CGGCG-CcccgGCCGa -3'
miRNA:   3'- -UGGGGCCuaCaGCCGUaGaauaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 77395 0.68 0.924344
Target:  5'- gACCCUGGG-GUCGGCGgcc---GCCGa -3'
miRNA:   3'- -UGGGGCCUaCAGCCGUagaauaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 13542 0.69 0.886993
Target:  5'- cACCCCGGGgggGUCGGUcagcugGUCcaaaACCGg -3'
miRNA:   3'- -UGGGGCCUa--CAGCCG------UAGaauaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 77017 0.69 0.886993
Target:  5'- gACCCCGGAUaccgcGaCGGC-UCUg--GCCGg -3'
miRNA:   3'- -UGGGGCCUA-----CaGCCGuAGAauaUGGC- -5'
5113 3' -53.5 NC_001798.1 + 36271 0.71 0.824583
Target:  5'- gACCCCgGGGUGggCGGCGgggggggGUGCCGu -3'
miRNA:   3'- -UGGGG-CCUACa-GCCGUagaa---UAUGGC- -5'
5113 3' -53.5 NC_001798.1 + 83545 0.71 0.788852
Target:  5'- aGCgCCCGGAcguUGUCGGCGguaaugGUGCUGg -3'
miRNA:   3'- -UG-GGGCCU---ACAGCCGUagaa--UAUGGC- -5'
5113 3' -53.5 NC_001798.1 + 143607 1.09 0.004969
Target:  5'- gACCCCGGAUGUCGGCAUCUUAUACCGa -3'
miRNA:   3'- -UGGGGCCUACAGCCGUAGAAUAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.