Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5113 | 3' | -53.5 | NC_001798.1 | + | 35569 | 0.66 | 0.973196 |
Target: 5'- gGCCCCGGAgcccgCGGCGcugcUCggcugcgGCCGc -3' miRNA: 3'- -UGGGGCCUaca--GCCGU----AGaaua---UGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 128071 | 0.66 | 0.970655 |
Target: 5'- cCCCCGGAccccgacccgaugugGUCGGCGUCggcgauCCc -3' miRNA: 3'- uGGGGCCUa--------------CAGCCGUAGaauau-GGc -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 38720 | 0.66 | 0.967322 |
Target: 5'- gGCCCCcgGGAUGUaaaaGuGCAUCgucucGCCGg -3' miRNA: 3'- -UGGGG--CCUACAg---C-CGUAGaaua-UGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 117190 | 0.66 | 0.964066 |
Target: 5'- cACCCCGGGU-UCGGguUC----ACCGu -3' miRNA: 3'- -UGGGGCCUAcAGCCguAGaauaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 4741 | 0.66 | 0.960947 |
Target: 5'- uCCCCGGAcgccggggccgccucGUCGGCAUCggc-AUCGg -3' miRNA: 3'- uGGGGCCUa--------------CAGCCGUAGaauaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 24408 | 0.66 | 0.96059 |
Target: 5'- uGCCgUCGGcgG-CGGCGUCgccgGCCGa -3' miRNA: 3'- -UGG-GGCCuaCaGCCGUAGaauaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 148841 | 0.67 | 0.956888 |
Target: 5'- gGCCUCGGGggUGggggCGGCuUCUcGUGCCc -3' miRNA: 3'- -UGGGGCCU--ACa---GCCGuAGAaUAUGGc -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 102301 | 0.67 | 0.952956 |
Target: 5'- uACUCCGGcugcuccaccucGUGUCGGCGgcgCUUc-GCCGa -3' miRNA: 3'- -UGGGGCC------------UACAGCCGUa--GAAuaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 74767 | 0.67 | 0.948789 |
Target: 5'- gGCCCCGGAcGccgCGGCcUCggGUccACCGc -3' miRNA: 3'- -UGGGGCCUaCa--GCCGuAGaaUA--UGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 45467 | 0.67 | 0.944385 |
Target: 5'- aGCCCCGGAgguugcGUCGGUcccaGUCacccacGCCGg -3' miRNA: 3'- -UGGGGCCUa-----CAGCCG----UAGaaua--UGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 89466 | 0.68 | 0.934852 |
Target: 5'- cGCCCCuGGGUGUCcGGCAggaugaagcccuUCUg--GCCc -3' miRNA: 3'- -UGGGG-CCUACAG-CCGU------------AGAauaUGGc -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 121364 | 0.68 | 0.934852 |
Target: 5'- cACCCCGuGgcGuUCGGCGUUUgccgccuacGUGCCGg -3' miRNA: 3'- -UGGGGC-CuaC-AGCCGUAGAa--------UAUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 3961 | 0.68 | 0.929721 |
Target: 5'- gGCgCCGGAggccgcGUCGGCGUCcagcucgACCGc -3' miRNA: 3'- -UGgGGCCUa-----CAGCCGUAGaaua---UGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 23573 | 0.68 | 0.924344 |
Target: 5'- gGCCCCGGggG-CGGCG-CcccgGCCGa -3' miRNA: 3'- -UGGGGCCuaCaGCCGUaGaauaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 77395 | 0.68 | 0.924344 |
Target: 5'- gACCCUGGG-GUCGGCGgcc---GCCGa -3' miRNA: 3'- -UGGGGCCUaCAGCCGUagaauaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 13542 | 0.69 | 0.886993 |
Target: 5'- cACCCCGGGgggGUCGGUcagcugGUCcaaaACCGg -3' miRNA: 3'- -UGGGGCCUa--CAGCCG------UAGaauaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 77017 | 0.69 | 0.886993 |
Target: 5'- gACCCCGGAUaccgcGaCGGC-UCUg--GCCGg -3' miRNA: 3'- -UGGGGCCUA-----CaGCCGuAGAauaUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 36271 | 0.71 | 0.824583 |
Target: 5'- gACCCCgGGGUGggCGGCGgggggggGUGCCGu -3' miRNA: 3'- -UGGGG-CCUACa-GCCGUagaa---UAUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 83545 | 0.71 | 0.788852 |
Target: 5'- aGCgCCCGGAcguUGUCGGCGguaaugGUGCUGg -3' miRNA: 3'- -UG-GGGCCU---ACAGCCGUagaa--UAUGGC- -5' |
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5113 | 3' | -53.5 | NC_001798.1 | + | 143607 | 1.09 | 0.004969 |
Target: 5'- gACCCCGGAUGUCGGCAUCUUAUACCGa -3' miRNA: 3'- -UGGGGCCUACAGCCGUAGAAUAUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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