miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5113 5' -51.9 NC_001798.1 + 137390 0.66 0.987959
Target:  5'- cUCGGCGUuc--UCCCGGGcgacCGGGa -3'
miRNA:   3'- uAGCCGUAuuacAGGGCCCaaa-GCUC- -5'
5113 5' -51.9 NC_001798.1 + 69961 0.66 0.987959
Target:  5'- -gCGGCGUAcuUGcgacacgCCCgGGGUUUCGAa -3'
miRNA:   3'- uaGCCGUAUu-ACa------GGG-CCCAAAGCUc -5'
5113 5' -51.9 NC_001798.1 + 47088 0.66 0.982664
Target:  5'- -cCGGUGUGGUguccGUCCCGGGggUCc-- -3'
miRNA:   3'- uaGCCGUAUUA----CAGGGCCCaaAGcuc -5'
5113 5' -51.9 NC_001798.1 + 147152 0.67 0.975779
Target:  5'- -cCGGCcgGggGUCCCGGGUa----- -3'
miRNA:   3'- uaGCCGuaUuaCAGGGCCCAaagcuc -5'
5113 5' -51.9 NC_001798.1 + 15270 0.67 0.975779
Target:  5'- --gGGCG--GUGcCCCGGGUUcCGGGc -3'
miRNA:   3'- uagCCGUauUACaGGGCCCAAaGCUC- -5'
5113 5' -51.9 NC_001798.1 + 95310 0.67 0.970195
Target:  5'- -gCGGCGUcgaGUCUCGGGgg-CGGGg -3'
miRNA:   3'- uaGCCGUAuuaCAGGGCCCaaaGCUC- -5'
5113 5' -51.9 NC_001798.1 + 11642 0.67 0.970195
Target:  5'- --gGGCGUcccuGUGUcCCCGGGgg-CGGGg -3'
miRNA:   3'- uagCCGUAu---UACA-GGGCCCaaaGCUC- -5'
5113 5' -51.9 NC_001798.1 + 19284 0.68 0.956377
Target:  5'- -aCGGCGUGGUGgugCCCGGcgacCGGGa -3'
miRNA:   3'- uaGCCGUAUUACa--GGGCCcaaaGCUC- -5'
5113 5' -51.9 NC_001798.1 + 128519 0.69 0.917072
Target:  5'- cGUCGGCgGUGAUGUUCgggCGGGUgaaCGAGc -3'
miRNA:   3'- -UAGCCG-UAUUACAGG---GCCCAaa-GCUC- -5'
5113 5' -51.9 NC_001798.1 + 58281 0.7 0.911022
Target:  5'- -gCGGgucCGUGAgGUCCCGGGgcgCGAGg -3'
miRNA:   3'- uaGCC---GUAUUaCAGGGCCCaaaGCUC- -5'
5113 5' -51.9 NC_001798.1 + 65468 0.7 0.90472
Target:  5'- aGUCGGCGagcgacaugcUGGUGUCCCGG---UCGAa -3'
miRNA:   3'- -UAGCCGU----------AUUACAGGGCCcaaAGCUc -5'
5113 5' -51.9 NC_001798.1 + 135985 0.74 0.703354
Target:  5'- cGUCGuGCGcguAUGUCCCGGGgg-CGGGg -3'
miRNA:   3'- -UAGC-CGUau-UACAGGGCCCaaaGCUC- -5'
5113 5' -51.9 NC_001798.1 + 143641 1.08 0.007761
Target:  5'- gAUCGGCAUAAUGUCCCGGGUUUCGAGg -3'
miRNA:   3'- -UAGCCGUAUUACAGGGCCCAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.