Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5113 | 5' | -51.9 | NC_001798.1 | + | 137390 | 0.66 | 0.987959 |
Target: 5'- cUCGGCGUuc--UCCCGGGcgacCGGGa -3' miRNA: 3'- uAGCCGUAuuacAGGGCCCaaa-GCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 69961 | 0.66 | 0.987959 |
Target: 5'- -gCGGCGUAcuUGcgacacgCCCgGGGUUUCGAa -3' miRNA: 3'- uaGCCGUAUu-ACa------GGG-CCCAAAGCUc -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 47088 | 0.66 | 0.982664 |
Target: 5'- -cCGGUGUGGUguccGUCCCGGGggUCc-- -3' miRNA: 3'- uaGCCGUAUUA----CAGGGCCCaaAGcuc -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 147152 | 0.67 | 0.975779 |
Target: 5'- -cCGGCcgGggGUCCCGGGUa----- -3' miRNA: 3'- uaGCCGuaUuaCAGGGCCCAaagcuc -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 15270 | 0.67 | 0.975779 |
Target: 5'- --gGGCG--GUGcCCCGGGUUcCGGGc -3' miRNA: 3'- uagCCGUauUACaGGGCCCAAaGCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 11642 | 0.67 | 0.970195 |
Target: 5'- --gGGCGUcccuGUGUcCCCGGGgg-CGGGg -3' miRNA: 3'- uagCCGUAu---UACA-GGGCCCaaaGCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 95310 | 0.67 | 0.970195 |
Target: 5'- -gCGGCGUcgaGUCUCGGGgg-CGGGg -3' miRNA: 3'- uaGCCGUAuuaCAGGGCCCaaaGCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 19284 | 0.68 | 0.956377 |
Target: 5'- -aCGGCGUGGUGgugCCCGGcgacCGGGa -3' miRNA: 3'- uaGCCGUAUUACa--GGGCCcaaaGCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 128519 | 0.69 | 0.917072 |
Target: 5'- cGUCGGCgGUGAUGUUCgggCGGGUgaaCGAGc -3' miRNA: 3'- -UAGCCG-UAUUACAGG---GCCCAaa-GCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 58281 | 0.7 | 0.911022 |
Target: 5'- -gCGGgucCGUGAgGUCCCGGGgcgCGAGg -3' miRNA: 3'- uaGCC---GUAUUaCAGGGCCCaaaGCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 65468 | 0.7 | 0.90472 |
Target: 5'- aGUCGGCGagcgacaugcUGGUGUCCCGG---UCGAa -3' miRNA: 3'- -UAGCCGU----------AUUACAGGGCCcaaAGCUc -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 135985 | 0.74 | 0.703354 |
Target: 5'- cGUCGuGCGcguAUGUCCCGGGgg-CGGGg -3' miRNA: 3'- -UAGC-CGUau-UACAGGGCCCaaaGCUC- -5' |
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5113 | 5' | -51.9 | NC_001798.1 | + | 143641 | 1.08 | 0.007761 |
Target: 5'- gAUCGGCAUAAUGUCCCGGGUUUCGAGg -3' miRNA: 3'- -UAGCCGUAUUACAGGGCCCAAAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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