miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 5' -60.8 NC_001798.1 + 154266 0.68 0.561177
Target:  5'- ---cCCGUcccGGCUGGCGuGCGCagCCCGGg -3'
miRNA:   3'- cauaGGCAc--UCGACCGC-CGCG--GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 150041 0.66 0.68026
Target:  5'- -aGUCCG-GGGCccgGcGCGGCGCCgCCc- -3'
miRNA:   3'- caUAGGCaCUCGa--C-CGCCGCGG-GGuc -5'
5114 5' -60.8 NC_001798.1 + 147225 0.67 0.640519
Target:  5'- ---cCCGgcgGAGCgcgggGGCcccGGgGCCCCGGg -3'
miRNA:   3'- cauaGGCa--CUCGa----CCG---CCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 143227 1.08 0.001232
Target:  5'- cGUAUCCGUGAGCUGGCGGCGCCCCAGu -3'
miRNA:   3'- -CAUAGGCACUCGACCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 129354 0.68 0.590751
Target:  5'- ---cCCGccGGGcCUGGCGGgGCcCCCGGa -3'
miRNA:   3'- cauaGGCa-CUC-GACCGCCgCG-GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 127923 0.71 0.388691
Target:  5'- ----aCGUGGGCaacccgacGGCGGgGCCCCGGg -3'
miRNA:   3'- cauagGCACUCGa-------CCGCCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 127271 0.67 0.62058
Target:  5'- ----aCGUcGGGCUGGCGGUcgaucucuacGCCCUGGg -3'
miRNA:   3'- cauagGCA-CUCGACCGCCG----------CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 124075 0.68 0.541686
Target:  5'- ---cCCGgGAGgaGGCGGCGCCUg-- -3'
miRNA:   3'- cauaGGCaCUCgaCCGCCGCGGGguc -5'
5114 5' -60.8 NC_001798.1 + 123941 0.7 0.475532
Target:  5'- -gGUCCGgGGGcCUGGUGGCaccuCCCCGGc -3'
miRNA:   3'- caUAGGCaCUC-GACCGCCGc---GGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 113398 0.7 0.439577
Target:  5'- aUGUCaCGUG-GCUGGCacgGGCGCUCCu- -3'
miRNA:   3'- cAUAG-GCACuCGACCG---CCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 111584 0.67 0.654465
Target:  5'- --cUCCcUGAGCggggggcccggcggGGCGGCcuccuggaGCCCCGGg -3'
miRNA:   3'- cauAGGcACUCGa-------------CCGCCG--------CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 108756 0.68 0.561177
Target:  5'- -cAUCCGUGAcCUGGCuGGC-CgCCAGg -3'
miRNA:   3'- caUAGGCACUcGACCG-CCGcGgGGUC- -5'
5114 5' -60.8 NC_001798.1 + 104162 0.66 0.658445
Target:  5'- ---cCCGccUGGGCguccaggcacagGGCGGCcaGCCCCGGa -3'
miRNA:   3'- cauaGGC--ACUCGa-----------CCGCCG--CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 102054 0.68 0.561177
Target:  5'- cGUGUCUGcgugGGGgUGGUGGUaggGCCCCAc -3'
miRNA:   3'- -CAUAGGCa---CUCgACCGCCG---CGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 87902 0.68 0.590751
Target:  5'- -aGUCCGU--GUUGaGCGGaaCGCCCCGGg -3'
miRNA:   3'- caUAGGCAcuCGAC-CGCC--GCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 83850 0.71 0.396902
Target:  5'- -cGUCCGggcgGcGCUGGCGG-GCCCgAGg -3'
miRNA:   3'- caUAGGCa---CuCGACCGCCgCGGGgUC- -5'
5114 5' -60.8 NC_001798.1 + 79959 0.73 0.292489
Target:  5'- -cGUCCG-GAGC-GGCGGCGCCgCGu -3'
miRNA:   3'- caUAGGCaCUCGaCCGCCGCGGgGUc -5'
5114 5' -60.8 NC_001798.1 + 72803 0.69 0.48475
Target:  5'- --uUCC-UGGcgcGCUGGCGGCGCCUCu- -3'
miRNA:   3'- cauAGGcACU---CGACCGCCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 71586 0.67 0.616594
Target:  5'- cGgcUCUGUGAgGCggucggccugucgGGCGGCGUCCuCAGc -3'
miRNA:   3'- -CauAGGCACU-CGa------------CCGCCGCGGG-GUC- -5'
5114 5' -60.8 NC_001798.1 + 70607 0.67 0.630549
Target:  5'- aGUGUgCCGUGGaguggaucgaccGCUGGCGGacCGUcaCCCAGa -3'
miRNA:   3'- -CAUA-GGCACU------------CGACCGCC--GCG--GGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.