Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5114 | 5' | -60.8 | NC_001798.1 | + | 87902 | 0.68 | 0.590751 |
Target: 5'- -aGUCCGU--GUUGaGCGGaaCGCCCCGGg -3' miRNA: 3'- caUAGGCAcuCGAC-CGCC--GCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 129354 | 0.68 | 0.590751 |
Target: 5'- ---cCCGccGGGcCUGGCGGgGCcCCCGGa -3' miRNA: 3'- cauaGGCa-CUC-GACCGCCgCG-GGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 3890 | 0.67 | 0.61062 |
Target: 5'- ---cCCGgGGGCgGGgGGCcgGCCCCGGg -3' miRNA: 3'- cauaGGCaCUCGaCCgCCG--CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 28095 | 0.67 | 0.61062 |
Target: 5'- --cUCCugcgGcGCUGGCugcuGGUGCCCCAGg -3' miRNA: 3'- cauAGGca--CuCGACCG----CCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 71586 | 0.67 | 0.616594 |
Target: 5'- cGgcUCUGUGAgGCggucggccugucgGGCGGCGUCCuCAGc -3' miRNA: 3'- -CauAGGCACU-CGa------------CCGCCGCGGG-GUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 127271 | 0.67 | 0.62058 |
Target: 5'- ----aCGUcGGGCUGGCGGUcgaucucuacGCCCUGGg -3' miRNA: 3'- cauagGCA-CUCGACCGCCG----------CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 15377 | 0.67 | 0.62058 |
Target: 5'- ---gCCGUGGGCgcGGCggaGGCGCCcaCCGGa -3' miRNA: 3'- cauaGGCACUCGa-CCG---CCGCGG--GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 70607 | 0.67 | 0.630549 |
Target: 5'- aGUGUgCCGUGGaguggaucgaccGCUGGCGGacCGUcaCCCAGa -3' miRNA: 3'- -CAUA-GGCACU------------CGACCGCC--GCG--GGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 53315 | 0.67 | 0.630549 |
Target: 5'- -cGUCCG---GCUGGCGGCGCggcaCCAu -3' miRNA: 3'- caUAGGCacuCGACCGCCGCGg---GGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 147225 | 0.67 | 0.640519 |
Target: 5'- ---cCCGgcgGAGCgcgggGGCcccGGgGCCCCGGg -3' miRNA: 3'- cauaGGCa--CUCGa----CCG---CCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2603 | 0.66 | 0.713586 |
Target: 5'- --cUUCGggGGGCgcggggcgccgcccGGCGGCGCCCUGGc -3' miRNA: 3'- cauAGGCa-CUCGa-------------CCGCCGCGGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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