miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 143018 1.09 0.000958
Target:  5'- aUAACCGCCCGCAGCUGCUCGCGCACCu -3'
miRNA:   3'- -AUUGGCGGGCGUCGACGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 98786 0.81 0.099127
Target:  5'- -cGCCGCCgGCcacgccAGCUGCgCGCGCACCu -3'
miRNA:   3'- auUGGCGGgCG------UCGACGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 133752 0.8 0.118391
Target:  5'- -cGCgCGCCCGCGugggggcGCUGCUUGCGCACg -3'
miRNA:   3'- auUG-GCGGGCGU-------CGACGAGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 137988 0.79 0.131436
Target:  5'- cUGGgCGCgCCGCAGCUcGCggUCGCGCGCCu -3'
miRNA:   3'- -AUUgGCG-GGCGUCGA-CG--AGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153228 0.78 0.152926
Target:  5'- cGGCCcggGCCCGCGGCgGCggaggaccCGCGCGCCg -3'
miRNA:   3'- aUUGG---CGGGCGUCGaCGa-------GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 31678 0.78 0.141809
Target:  5'- -cGCCGCCCGCcguGCcggUGgaCGCGCACCg -3'
miRNA:   3'- auUGGCGGGCGu--CG---ACgaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 43063 0.78 0.160771
Target:  5'- gAGCCGCCgGCcgAGCgcgccggGCUCGgGCGCCg -3'
miRNA:   3'- aUUGGCGGgCG--UCGa------CGAGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153395 0.78 0.156804
Target:  5'- gAACCGgUCGCGGUcggcccGCUCGCGCGCCc -3'
miRNA:   3'- aUUGGCgGGCGUCGa-----CGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 79485 0.77 0.177556
Target:  5'- --gUCGaCCCGCAGCUGCUgCGC-CGCCg -3'
miRNA:   3'- auuGGC-GGGCGUCGACGA-GCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 109439 0.77 0.173219
Target:  5'- --cCCGCCUGCGGCUGgagGCGCGCCu -3'
miRNA:   3'- auuGGCGGGCGUCGACgagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 60087 0.77 0.177556
Target:  5'- gGACCGCCCGCAuGCUGCagUCGuCGacgACCa -3'
miRNA:   3'- aUUGGCGGGCGU-CGACG--AGC-GCg--UGG- -5'
5115 3' -60.4 NC_001798.1 + 140191 0.76 0.215835
Target:  5'- gGGCCGCCUGCGGCcggUGCUgGUGUGCg -3'
miRNA:   3'- aUUGGCGGGCGUCG---ACGAgCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 139145 0.76 0.19588
Target:  5'- -cGCCGCCUGCAGCUGUcggguggcggccUCGCuGgACCg -3'
miRNA:   3'- auUGGCGGGCGUCGACG------------AGCG-CgUGG- -5'
5115 3' -60.4 NC_001798.1 + 37162 0.76 0.215835
Target:  5'- -cGCCGCgCCGCcuggcgGGCcGCUCgGCGCGCCa -3'
miRNA:   3'- auUGGCG-GGCG------UCGaCGAG-CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 138610 0.76 0.19588
Target:  5'- -cGCUGCCCGCuGaccgGgUCGCGCACCa -3'
miRNA:   3'- auUGGCGGGCGuCga--CgAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 97658 0.76 0.191149
Target:  5'- gGAgCGCCgGCGGCUGUaCGCGgACCg -3'
miRNA:   3'- aUUgGCGGgCGUCGACGaGCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 131563 0.75 0.254932
Target:  5'- cGACgGCCCGguGCguaacugugGUcCGCGCGCCa -3'
miRNA:   3'- aUUGgCGGGCguCGa--------CGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 72231 0.75 0.237506
Target:  5'- gGGCCGUCgaGCAGCUGCggccCGCGguCCa -3'
miRNA:   3'- aUUGGCGGg-CGUCGACGa---GCGCguGG- -5'
5115 3' -60.4 NC_001798.1 + 91369 0.75 0.249009
Target:  5'- gGGCCGCCCGCGGCacaaaacaUCGC-CGCCg -3'
miRNA:   3'- aUUGGCGGGCGUCGacg-----AGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 125303 0.75 0.237506
Target:  5'- -cACCGCCCGCAcCaGCUCGgGgGCCa -3'
miRNA:   3'- auUGGCGGGCGUcGaCGAGCgCgUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.