miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 142693 0.66 0.683611
Target:  5'- --cCCGCCCGCuuGCauauuccCUUGCGCGCg -3'
miRNA:   3'- auuGGCGGGCGu-CGac-----GAGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 149730 0.66 0.683611
Target:  5'- cGGCC-CCCGCGGCgcaGCa-GCGCggggGCCg -3'
miRNA:   3'- aUUGGcGGGCGUCGa--CGagCGCG----UGG- -5'
5115 3' -60.4 NC_001798.1 + 152384 0.66 0.683611
Target:  5'- gGGCCG-CCGCuccGUcGCUCGCaGUGCCg -3'
miRNA:   3'- aUUGGCgGGCGu--CGaCGAGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 120188 0.66 0.681624
Target:  5'- gGGCgGCUCGCAGUgauagaagaggaGCUCGgGCcCCg -3'
miRNA:   3'- aUUGgCGGGCGUCGa-----------CGAGCgCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 125745 0.66 0.68063
Target:  5'- -cGCCGCCaCGCGGCccUGCgcCGacguuuggccgagaCGCACCu -3'
miRNA:   3'- auUGGCGG-GCGUCG--ACGa-GC--------------GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 43630 0.66 0.673662
Target:  5'- -cACCGCCUcccgacccagggGCgagGGCUGCUCcGUGCugGCCg -3'
miRNA:   3'- auUGGCGGG------------CG---UCGACGAG-CGCG--UGG- -5'
5115 3' -60.4 NC_001798.1 + 68569 0.66 0.673662
Target:  5'- gAGgCGCCCGaaCAGCcGCUCGaGgGCCg -3'
miRNA:   3'- aUUgGCGGGC--GUCGaCGAGCgCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 121139 0.66 0.673662
Target:  5'- -cACCGCCgGCcgGGCcaUGaaCGCGCACUu -3'
miRNA:   3'- auUGGCGGgCG--UCG--ACgaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 124118 0.66 0.673662
Target:  5'- --uCCGCCaaCGC-GCUGUg-GCGCGCCc -3'
miRNA:   3'- auuGGCGG--GCGuCGACGagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 172 0.66 0.673662
Target:  5'- -cGCgCGCCgCGgGGCUGCcuucccgCGgGCGCCc -3'
miRNA:   3'- auUG-GCGG-GCgUCGACGa------GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 1220 0.66 0.673662
Target:  5'- -cGCgGCCCGCGGCcgacGCccaGCGUAUCu -3'
miRNA:   3'- auUGgCGGGCGUCGa---CGag-CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 1749 0.66 0.673662
Target:  5'- -cGCCGCCgGcCAGC-GCacgGCGCACUg -3'
miRNA:   3'- auUGGCGGgC-GUCGaCGag-CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 88666 0.66 0.673662
Target:  5'- aUGGCCaccagGCCCGCGGCcgugagGC-CGCgGCACa -3'
miRNA:   3'- -AUUGG-----CGGGCGUCGa-----CGaGCG-CGUGg -5'
5115 3' -60.4 NC_001798.1 + 106342 0.66 0.673662
Target:  5'- ---aUGCCCGUgguccGCUGUUCGCGUuugcugGCCg -3'
miRNA:   3'- auugGCGGGCGu----CGACGAGCGCG------UGG- -5'
5115 3' -60.4 NC_001798.1 + 117560 0.66 0.673662
Target:  5'- ---gCGCCCaGguGCcGCg-GCGCGCCg -3'
miRNA:   3'- auugGCGGG-CguCGaCGagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 154510 0.66 0.673662
Target:  5'- -cGCgCGCCgCGgGGCUGCcuucccgCGgGCGCCc -3'
miRNA:   3'- auUG-GCGG-GCgUCGACGa------GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 25803 0.66 0.672665
Target:  5'- -cGCCGuggaguuCCUGgGGCUGCUgGCcgGCGCCu -3'
miRNA:   3'- auUGGC-------GGGCgUCGACGAgCG--CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 133673 0.66 0.672665
Target:  5'- ---gCGCCUGCcggacgcacagacAGCUGUaCGCGCugCu -3'
miRNA:   3'- auugGCGGGCG-------------UCGACGaGCGCGugG- -5'
5115 3' -60.4 NC_001798.1 + 130703 0.67 0.66368
Target:  5'- aGACCG-CgGCGGCgGC-CGUGCACa -3'
miRNA:   3'- aUUGGCgGgCGUCGaCGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 118907 0.67 0.66368
Target:  5'- --cCCGCCCGUcuucgagggccaGGCgacGgaCGUGCGCCu -3'
miRNA:   3'- auuGGCGGGCG------------UCGa--CgaGCGCGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.