Results 41 - 60 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5115 | 3' | -60.4 | NC_001798.1 | + | 142693 | 0.66 | 0.683611 |
Target: 5'- --cCCGCCCGCuuGCauauuccCUUGCGCGCg -3' miRNA: 3'- auuGGCGGGCGu-CGac-----GAGCGCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 149730 | 0.66 | 0.683611 |
Target: 5'- cGGCC-CCCGCGGCgcaGCa-GCGCggggGCCg -3' miRNA: 3'- aUUGGcGGGCGUCGa--CGagCGCG----UGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 152384 | 0.66 | 0.683611 |
Target: 5'- gGGCCG-CCGCuccGUcGCUCGCaGUGCCg -3' miRNA: 3'- aUUGGCgGGCGu--CGaCGAGCG-CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 120188 | 0.66 | 0.681624 |
Target: 5'- gGGCgGCUCGCAGUgauagaagaggaGCUCGgGCcCCg -3' miRNA: 3'- aUUGgCGGGCGUCGa-----------CGAGCgCGuGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 125745 | 0.66 | 0.68063 |
Target: 5'- -cGCCGCCaCGCGGCccUGCgcCGacguuuggccgagaCGCACCu -3' miRNA: 3'- auUGGCGG-GCGUCG--ACGa-GC--------------GCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 43630 | 0.66 | 0.673662 |
Target: 5'- -cACCGCCUcccgacccagggGCgagGGCUGCUCcGUGCugGCCg -3' miRNA: 3'- auUGGCGGG------------CG---UCGACGAG-CGCG--UGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 68569 | 0.66 | 0.673662 |
Target: 5'- gAGgCGCCCGaaCAGCcGCUCGaGgGCCg -3' miRNA: 3'- aUUgGCGGGC--GUCGaCGAGCgCgUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 121139 | 0.66 | 0.673662 |
Target: 5'- -cACCGCCgGCcgGGCcaUGaaCGCGCACUu -3' miRNA: 3'- auUGGCGGgCG--UCG--ACgaGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 124118 | 0.66 | 0.673662 |
Target: 5'- --uCCGCCaaCGC-GCUGUg-GCGCGCCc -3' miRNA: 3'- auuGGCGG--GCGuCGACGagCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 172 | 0.66 | 0.673662 |
Target: 5'- -cGCgCGCCgCGgGGCUGCcuucccgCGgGCGCCc -3' miRNA: 3'- auUG-GCGG-GCgUCGACGa------GCgCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 1220 | 0.66 | 0.673662 |
Target: 5'- -cGCgGCCCGCGGCcgacGCccaGCGUAUCu -3' miRNA: 3'- auUGgCGGGCGUCGa---CGag-CGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 1749 | 0.66 | 0.673662 |
Target: 5'- -cGCCGCCgGcCAGC-GCacgGCGCACUg -3' miRNA: 3'- auUGGCGGgC-GUCGaCGag-CGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 88666 | 0.66 | 0.673662 |
Target: 5'- aUGGCCaccagGCCCGCGGCcgugagGC-CGCgGCACa -3' miRNA: 3'- -AUUGG-----CGGGCGUCGa-----CGaGCG-CGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 106342 | 0.66 | 0.673662 |
Target: 5'- ---aUGCCCGUgguccGCUGUUCGCGUuugcugGCCg -3' miRNA: 3'- auugGCGGGCGu----CGACGAGCGCG------UGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 117560 | 0.66 | 0.673662 |
Target: 5'- ---gCGCCCaGguGCcGCg-GCGCGCCg -3' miRNA: 3'- auugGCGGG-CguCGaCGagCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 154510 | 0.66 | 0.673662 |
Target: 5'- -cGCgCGCCgCGgGGCUGCcuucccgCGgGCGCCc -3' miRNA: 3'- auUG-GCGG-GCgUCGACGa------GCgCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 25803 | 0.66 | 0.672665 |
Target: 5'- -cGCCGuggaguuCCUGgGGCUGCUgGCcgGCGCCu -3' miRNA: 3'- auUGGC-------GGGCgUCGACGAgCG--CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 133673 | 0.66 | 0.672665 |
Target: 5'- ---gCGCCUGCcggacgcacagacAGCUGUaCGCGCugCu -3' miRNA: 3'- auugGCGGGCG-------------UCGACGaGCGCGugG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 130703 | 0.67 | 0.66368 |
Target: 5'- aGACCG-CgGCGGCgGC-CGUGCACa -3' miRNA: 3'- aUUGGCgGgCGUCGaCGaGCGCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 118907 | 0.67 | 0.66368 |
Target: 5'- --cCCGCCCGUcuucgagggccaGGCgacGgaCGUGCGCCu -3' miRNA: 3'- auuGGCGGGCG------------UCGa--CgaGCGCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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