Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5115 | 5' | -50.7 | NC_001798.1 | + | 86161 | 0.73 | 0.751438 |
Target: 5'- -gGGCGCGCaUGCGCGAcGCGGccccGCGUu -3' miRNA: 3'- aaCCGCGCGaACGUGUUuUGCU----UGUA- -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 88690 | 0.66 | 0.988103 |
Target: 5'- -aGGC-CGCg-GCACAAAACGAAa-- -3' miRNA: 3'- aaCCGcGCGaaCGUGUUUUGCUUgua -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 92320 | 0.69 | 0.9311 |
Target: 5'- -cGGCGCGCa-GCGgCGAcGCGGACGUc -3' miRNA: 3'- aaCCGCGCGaaCGU-GUUuUGCUUGUA- -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 96035 | 0.68 | 0.962861 |
Target: 5'- -gGGCGgGCggGCGgGcGACGGGCAUa -3' miRNA: 3'- aaCCGCgCGaaCGUgUuUUGCUUGUA- -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 111905 | 0.68 | 0.955096 |
Target: 5'- -aGGUGCGCcuggGC-CAGGGCGAAUAc -3' miRNA: 3'- aaCCGCGCGaa--CGuGUUUUGCUUGUa -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 117574 | 0.73 | 0.751438 |
Target: 5'- -cGGCGCGCcgGCAUGGAccACGGGCAg -3' miRNA: 3'- aaCCGCGCGaaCGUGUUU--UGCUUGUa -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 120370 | 0.67 | 0.969637 |
Target: 5'- -gGGCGagGCUgUGCACGAcgcAGCGGGCGa -3' miRNA: 3'- aaCCGCg-CGA-ACGUGUU---UUGCUUGUa -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 125483 | 0.66 | 0.98959 |
Target: 5'- cUGGUgGCGCUUGgGCGucGCGGugGc -3' miRNA: 3'- aACCG-CGCGAACgUGUuuUGCUugUa -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 125712 | 0.7 | 0.89339 |
Target: 5'- -gGGCGCGCgcggggGCGgCGAGAUGAGCc- -3' miRNA: 3'- aaCCGCGCGaa----CGU-GUUUUGCUUGua -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 130376 | 0.68 | 0.955096 |
Target: 5'- -aGGCGCGCgUGCACcGAAgcACGGcCAUg -3' miRNA: 3'- aaCCGCGCGaACGUG-UUU--UGCUuGUA- -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 134081 | 0.69 | 0.946298 |
Target: 5'- -aGGCGCGCgcGCGCuucGCGGAgGUg -3' miRNA: 3'- aaCCGCGCGaaCGUGuuuUGCUUgUA- -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 142126 | 0.66 | 0.98959 |
Target: 5'- -cGaGCGCGCUgccggacgcgGCACAGGugGuGCAc -3' miRNA: 3'- aaC-CGCGCGAa---------CGUGUUUugCuUGUa -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 143053 | 1.03 | 0.016068 |
Target: 5'- gUUGGCGCGCUUGCACAAAACGAACAUc -3' miRNA: 3'- -AACCGCGCGAACGUGUUUUGCUUGUA- -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 150348 | 0.7 | 0.913458 |
Target: 5'- -gGGCGCGCggUGCGCGuccaccggcacGGCGGGCGg -3' miRNA: 3'- aaCCGCGCGa-ACGUGUu----------UUGCUUGUa -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 150422 | 0.68 | 0.962861 |
Target: 5'- -gGGCG-GCggcgGCGCGGGGCGGACu- -3' miRNA: 3'- aaCCGCgCGaa--CGUGUUUUGCUUGua -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 150475 | 0.66 | 0.98959 |
Target: 5'- -gGGCGCGCggcGCGCcccGACGAcugugGCAg -3' miRNA: 3'- aaCCGCGCGaa-CGUGuu-UUGCU-----UGUa -5' |
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5115 | 5' | -50.7 | NC_001798.1 | + | 153044 | 0.66 | 0.98464 |
Target: 5'- -cGGCGCGCgguuggccgGCGCcgcccccuGGGGCGGGCGg -3' miRNA: 3'- aaCCGCGCGaa-------CGUG--------UUUUGCUUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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