miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 142529 1.09 0.000423
Target:  5'- cGUCCGCCCGACCACACCCCCCGCCCCc -3'
miRNA:   3'- -CAGGCGGGCUGGUGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 25153 0.92 0.007973
Target:  5'- -gCCGCCCcucccgcgggGGCCGCGCCCCCCGCCCCg -3'
miRNA:   3'- caGGCGGG----------CUGGUGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 151085 0.88 0.016765
Target:  5'- -cCCGCCCGACCcccgccCGCCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGGu-----GUGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 145416 0.85 0.023966
Target:  5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 145458 0.85 0.023966
Target:  5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 145500 0.85 0.023966
Target:  5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 48390 0.84 0.030905
Target:  5'- -gCCGCCgCGACCGCACgggCCCCCGCCCg -3'
miRNA:   3'- caGGCGG-GCUGGUGUG---GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 54860 0.83 0.034204
Target:  5'- -gCCGCCUGgccggccgaaaGCCACGCCcCCCCGCCCCc -3'
miRNA:   3'- caGGCGGGC-----------UGGUGUGG-GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 111733 0.83 0.037849
Target:  5'- -cCCGCuuGGCCcccGCGCCCCCgGCCCCg -3'
miRNA:   3'- caGGCGggCUGG---UGUGGGGGgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 35743 0.82 0.04083
Target:  5'- -cCCGCCCGGCCGCccACUCCCCGCUCg -3'
miRNA:   3'- caGGCGGGCUGGUG--UGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 25092 0.82 0.041874
Target:  5'- -gCCGCCgGGCgGCGCCCCgCGCCCCc -3'
miRNA:   3'- caGGCGGgCUGgUGUGGGGgGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 740 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 890 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 830 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 680 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 128318 0.82 0.042944
Target:  5'- cGUCCGCcgCCGaaGCCGuCGCCCCCCGCCCg -3'
miRNA:   3'- -CAGGCG--GGC--UGGU-GUGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 860 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 800 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 770 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 710 0.82 0.042944
Target:  5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3'
miRNA:   3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.