miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 96915 0.66 0.499794
Target:  5'- -gCCGCCgGGCUgucggACGCCgCCCGCgCg -3'
miRNA:   3'- caGGCGGgCUGG-----UGUGGgGGGCGgGg -5'
5116 3' -66.1 NC_001798.1 + 32585 0.66 0.499794
Target:  5'- -cCCGCgUGgagccGCCGCACCCUgCuCCCCg -3'
miRNA:   3'- caGGCGgGC-----UGGUGUGGGGgGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 5188 0.66 0.490896
Target:  5'- -gCCGCgUCGguaGCCGCGCUCCguguggacgaUCGCCCCg -3'
miRNA:   3'- caGGCG-GGC---UGGUGUGGGG----------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 54816 0.66 0.490896
Target:  5'- --gCGUCgGGCUugGCgccaCCCCCGCCgCCg -3'
miRNA:   3'- cagGCGGgCUGGugUG----GGGGGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 11039 0.66 0.490896
Target:  5'- cUCCcCCCgGGCCcCGCCCauccauuaCCCGCCUCc -3'
miRNA:   3'- cAGGcGGG-CUGGuGUGGG--------GGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 47665 0.66 0.490896
Target:  5'- uUCCGCCgCGGCgCugGCCCgaugcgcgCgCGCCCg -3'
miRNA:   3'- cAGGCGG-GCUG-GugUGGG--------GgGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 54784 0.66 0.490896
Target:  5'- -gCUGCCCGACgaugACGCCgCCaUGCCCg -3'
miRNA:   3'- caGGCGGGCUGg---UGUGGgGG-GCGGGg -5'
5116 3' -66.1 NC_001798.1 + 148226 0.66 0.490896
Target:  5'- --aCGCgCGA--GC-CCCCUCGCCCCg -3'
miRNA:   3'- cagGCGgGCUggUGuGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 151959 0.66 0.490896
Target:  5'- gGUCUGCguccuuuggauuCCGACCccucgucuCcCCCCCUGUCCCc -3'
miRNA:   3'- -CAGGCG------------GGCUGGu-------GuGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 86106 0.66 0.490896
Target:  5'- -gCCGCCgCGG--ACGCCCgCCGCgCCg -3'
miRNA:   3'- caGGCGG-GCUggUGUGGGgGGCGgGG- -5'
5116 3' -66.1 NC_001798.1 + 126292 0.66 0.490896
Target:  5'- cUCCcCCCGAgaCgGCGCCgucuccggagCCCGCCCCg -3'
miRNA:   3'- cAGGcGGGCU--GgUGUGGg---------GGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 128824 0.66 0.490896
Target:  5'- cGUUCGaCCCcgcgGACCccgGCGCCCCCgCgGCCuCCg -3'
miRNA:   3'- -CAGGC-GGG----CUGG---UGUGGGGG-G-CGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 146485 0.66 0.49001
Target:  5'- cUCCgggGCCgGGCCGgGCCggcaacgCCCCGCgCCg -3'
miRNA:   3'- cAGG---CGGgCUGGUgUGG-------GGGGCGgGG- -5'
5116 3' -66.1 NC_001798.1 + 29778 0.66 0.489125
Target:  5'- -cCCgGCCCGGCacgaGCucccgggcggaCCCCgGCCCCg -3'
miRNA:   3'- caGG-CGGGCUGg---UGug---------GGGGgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 116983 0.66 0.482951
Target:  5'- uUCCcCCCGGCCcugcgcgaccuggcGCGcgacgucccccugguCCCCCCGgCCCu -3'
miRNA:   3'- cAGGcGGGCUGG--------------UGU---------------GGGGGGCgGGG- -5'
5116 3' -66.1 NC_001798.1 + 9616 0.66 0.482072
Target:  5'- -gCgGCCagcaacagGGCCGC-CCCCagcaCCGCCCCg -3'
miRNA:   3'- caGgCGGg-------CUGGUGuGGGG----GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 118416 0.66 0.482072
Target:  5'- -cCCGUgCGugCugcugaGCCcugCCCCGCCCCc -3'
miRNA:   3'- caGGCGgGCugGug----UGG---GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 66646 0.66 0.482072
Target:  5'- cGUCC-CCCagaaACCGCGCCa-CCGCCuCCg -3'
miRNA:   3'- -CAGGcGGGc---UGGUGUGGggGGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 27991 0.66 0.482072
Target:  5'- cUCCaGCCguGCCGCGCCCCggcgCGCuCCCa -3'
miRNA:   3'- cAGG-CGGgcUGGUGUGGGGg---GCG-GGG- -5'
5116 3' -66.1 NC_001798.1 + 22101 0.66 0.482072
Target:  5'- -gCCGCCCgcgGACCAacggggcgACCUCgCCGgCCCCu -3'
miRNA:   3'- caGGCGGG---CUGGUg-------UGGGG-GGC-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.