miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 40139 0.67 0.849777
Target:  5'- gGAUGGCGGGUGuccUCCgAGgGGGCg -3'
miRNA:   3'- gUUGCCGCCCGCucaAGGgUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 70291 0.67 0.849777
Target:  5'- aCGGCGGCguuucuguugucGGGCGcggcGGUcggCCCGGCGGAg -3'
miRNA:   3'- -GUUGCCG------------CCCGC----UCAa--GGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 9696 0.67 0.857659
Target:  5'- -cACGuGCGGGCGGGUgggCUCGaCGGGCu -3'
miRNA:   3'- guUGC-CGCCCGCUCAa--GGGUcGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 44687 0.67 0.857659
Target:  5'- aCAACGGCucGGCc----CCCAGCAGGCa -3'
miRNA:   3'- -GUUGCCGc-CCGcucaaGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 2690 0.67 0.857659
Target:  5'- -cGCGGCGaGCGAGUcggCCgCGGCGAc- -3'
miRNA:   3'- guUGCCGCcCGCUCAa--GG-GUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 95375 0.67 0.857659
Target:  5'- -uGCGGaGGGCGGGgcggcggUCgCCAGCAGc- -3'
miRNA:   3'- guUGCCgCCCGCUCa------AG-GGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 1834 0.67 0.865334
Target:  5'- --uCGGCGGGCcAG-UCCgCGGCGcGCa -3'
miRNA:   3'- guuGCCGCCCGcUCaAGG-GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 20348 0.67 0.865334
Target:  5'- aGGCGGUuggcgcugccGGGCGGGUUCggggCGGCAcGCa -3'
miRNA:   3'- gUUGCCG----------CCCGCUCAAGg---GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 153083 0.67 0.865334
Target:  5'- gAGCGGCgGGGCGGcgccGggCCCucGCGGAUa -3'
miRNA:   3'- gUUGCCG-CCCGCU----CaaGGGu-CGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 1776 0.67 0.865334
Target:  5'- -cACGGCGGGC-AGcaCCUcGCAGGCc -3'
miRNA:   3'- guUGCCGCCCGcUCaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 31360 0.67 0.865334
Target:  5'- -cGCGGCGGGUGGGcgaagacgCCgCGGCGGc- -3'
miRNA:   3'- guUGCCGCCCGCUCaa------GG-GUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 31015 0.66 0.91281
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 30982 0.66 0.91281
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 16489 0.66 0.900405
Target:  5'- uGACGGCaGGcGCGGGUgagCCGGUAGuACg -3'
miRNA:   3'- gUUGCCG-CC-CGCUCAag-GGUCGUU-UG- -5'
5116 5' -55.6 NC_001798.1 + 56565 0.66 0.89781
Target:  5'- gCGACGGCcaccuucuccgccGGCGAGgagucgUCCCccaggaaccaGGCAAACg -3'
miRNA:   3'- -GUUGCCGc------------CCGCUCa-----AGGG----------UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 153802 0.66 0.893847
Target:  5'- gCGGCGGCGGGgGgcAGgcggCGGCAGGCg -3'
miRNA:   3'- -GUUGCCGCCCgC--UCaaggGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 42489 0.66 0.893847
Target:  5'- aCAACGuacgGGGCGGGga-CCGGUAGGCa -3'
miRNA:   3'- -GUUGCcg--CCCGCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 30146 0.66 0.893847
Target:  5'- aAGCaGCGGGCGGGgggCCgGGguGAg -3'
miRNA:   3'- gUUGcCGCCCGCUCaa-GGgUCguUUg -5'
5116 5' -55.6 NC_001798.1 + 76651 0.66 0.893847
Target:  5'- -uGCGGCaGGCGAGggCCauggaGGCGGc- -3'
miRNA:   3'- guUGCCGcCCGCUCaaGGg----UCGUUug -5'
5116 5' -55.6 NC_001798.1 + 38939 0.66 0.91281
Target:  5'- aGGC-GCGuGGCGAGguuUUCCAGCAcGGCg -3'
miRNA:   3'- gUUGcCGC-CCGCUCa--AGGGUCGU-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.