miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 2988 0.69 0.708556
Target:  5'- gCGgcCGGCCcGCGg-GCCCCGGGcGCGg -3'
miRNA:   3'- -GCauGUCGGaUGUagUGGGGUCC-CGC- -5'
5117 3' -56.8 NC_001798.1 + 3220 0.76 0.374129
Target:  5'- --cGCGGCgCU-CAggCGCCCCAGGGCGg -3'
miRNA:   3'- gcaUGUCG-GAuGUa-GUGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 3743 0.69 0.718454
Target:  5'- gCGUACuGCUgcgccGCGUCGCCCagcucGGGCGc -3'
miRNA:   3'- -GCAUGuCGGa----UGUAGUGGGgu---CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 3875 0.75 0.416119
Target:  5'- cCGUACAGC--ACG-CGCCCCGgGGGCGg -3'
miRNA:   3'- -GCAUGUCGgaUGUaGUGGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 4070 0.68 0.765729
Target:  5'- --gGCGGCCcGCgGUCGCCgcggggguccgggCCGGGGCGg -3'
miRNA:   3'- gcaUGUCGGaUG-UAGUGG-------------GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 4121 0.67 0.811935
Target:  5'- gCGggcuCGGCCgggGCGcCGCCCCcGGGGCc -3'
miRNA:   3'- -GCau--GUCGGa--UGUaGUGGGG-UCCCGc -5'
5117 3' -56.8 NC_001798.1 + 5015 0.66 0.896136
Target:  5'- cCGcUGCuccGCCgACAUCGCCuccgaCCGGGGUGu -3'
miRNA:   3'- -GC-AUGu--CGGaUGUAGUGG-----GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 5879 0.69 0.718454
Target:  5'- --cGgGGCCcGCGUCAUCCCGcGGGCu -3'
miRNA:   3'- gcaUgUCGGaUGUAGUGGGGU-CCCGc -5'
5117 3' -56.8 NC_001798.1 + 10480 0.66 0.875627
Target:  5'- uGUACAGaCCgcUGUCcguCUCCAGGGCc -3'
miRNA:   3'- gCAUGUC-GGauGUAGu--GGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 10568 0.66 0.882684
Target:  5'- -aUACAGUCccuCGUCGCCCgCGGGGa- -3'
miRNA:   3'- gcAUGUCGGau-GUAGUGGG-GUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 15923 0.68 0.80317
Target:  5'- gCGUACGGaCCguCAUCuaggGCCCCGGGGg- -3'
miRNA:   3'- -GCAUGUC-GGauGUAG----UGGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 18083 0.66 0.896136
Target:  5'- gGUA-GGCC-ACGUCA-UCCGGGGCGu -3'
miRNA:   3'- gCAUgUCGGaUGUAGUgGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 20111 0.66 0.868355
Target:  5'- cCGUugGucucgagauuGCCaACAUCACaCUCGGGGCc -3'
miRNA:   3'- -GCAugU----------CGGaUGUAGUG-GGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 23815 0.66 0.860873
Target:  5'- gGgcCGGCCccCcgC-CCCCGGGGCGc -3'
miRNA:   3'- gCauGUCGGauGuaGuGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 25202 0.68 0.785191
Target:  5'- --cGCGGCC-GCcgCGCCCCGcGGCGc -3'
miRNA:   3'- gcaUGUCGGaUGuaGUGGGGUcCCGC- -5'
5117 3' -56.8 NC_001798.1 + 25322 0.67 0.853188
Target:  5'- uGga-GGCCUACugCGCCCCGcGGGCc -3'
miRNA:   3'- gCaugUCGGAUGuaGUGGGGU-CCCGc -5'
5117 3' -56.8 NC_001798.1 + 26310 0.67 0.820538
Target:  5'- cCGcUGCGGCCcgucUACGUgGCgCUGGGGCGc -3'
miRNA:   3'- -GC-AUGUCGG----AUGUAgUGgGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 27460 0.69 0.746713
Target:  5'- --cACAGCCUGCuaguCCCCguccugccgcgcgGGGGCGg -3'
miRNA:   3'- gcaUGUCGGAUGuaguGGGG-------------UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 27993 0.67 0.845305
Target:  5'- ---cCAGCCgUGCcgCGCCCCGGcGCGc -3'
miRNA:   3'- gcauGUCGG-AUGuaGUGGGGUCcCGC- -5'
5117 3' -56.8 NC_001798.1 + 29990 0.66 0.881988
Target:  5'- cCGUG-GGCCgUGCGcCGCCCCccgacccucugggGGGGCGa -3'
miRNA:   3'- -GCAUgUCGG-AUGUaGUGGGG-------------UCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.