miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 23815 0.66 0.860873
Target:  5'- gGgcCGGCCccCcgC-CCCCGGGGCGc -3'
miRNA:   3'- gCauGUCGGauGuaGuGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 32675 0.66 0.860873
Target:  5'- --aACAGCCUcuGgAUgACCCCGguGGGCa -3'
miRNA:   3'- gcaUGUCGGA--UgUAgUGGGGU--CCCGc -5'
5117 3' -56.8 NC_001798.1 + 75853 0.66 0.860873
Target:  5'- --cGCuGGCCca-GUUugCCCGGGGCGa -3'
miRNA:   3'- gcaUG-UCGGaugUAGugGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 117770 0.66 0.860873
Target:  5'- --cGCGGCC-ACGgccaACCCguGGGCGu -3'
miRNA:   3'- gcaUGUCGGaUGUag--UGGGguCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 135439 0.67 0.853188
Target:  5'- -uUGCGGUCUGCggCGgCaCCGGGGCu -3'
miRNA:   3'- gcAUGUCGGAUGuaGUgG-GGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 49850 0.67 0.853188
Target:  5'- aGUGCGGCg-GCGgaggaaCCCGGGGCGc -3'
miRNA:   3'- gCAUGUCGgaUGUagug--GGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 25322 0.67 0.853188
Target:  5'- uGga-GGCCUACugCGCCCCGcGGGCc -3'
miRNA:   3'- gCaugUCGGAUGuaGUGGGGU-CCCGc -5'
5117 3' -56.8 NC_001798.1 + 27993 0.67 0.845305
Target:  5'- ---cCAGCCgUGCcgCGCCCCGGcGCGc -3'
miRNA:   3'- gcauGUCGG-AUGuaGUGGGGUCcCGC- -5'
5117 3' -56.8 NC_001798.1 + 58749 0.67 0.845305
Target:  5'- uCGU-CAGCCcgccgACGaCAacCCCCAGGGUGc -3'
miRNA:   3'- -GCAuGUCGGa----UGUaGU--GGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 38479 0.67 0.845305
Target:  5'- aCGcGCAcGCCgGCAUCGCCCCGGaGUc -3'
miRNA:   3'- -GCaUGU-CGGaUGUAGUGGGGUCcCGc -5'
5117 3' -56.8 NC_001798.1 + 140430 0.67 0.837231
Target:  5'- aGUACGGCCUuccCAUCA-CCgAGGaGCa -3'
miRNA:   3'- gCAUGUCGGAu--GUAGUgGGgUCC-CGc -5'
5117 3' -56.8 NC_001798.1 + 153052 0.67 0.828973
Target:  5'- gGU-UGGCCgGCGcCGCCCCcuGGGGCGg -3'
miRNA:   3'- gCAuGUCGGaUGUaGUGGGG--UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 31233 0.67 0.828973
Target:  5'- --aGCAGCagcgGCggCGCCCCGuugcGGGCGg -3'
miRNA:   3'- gcaUGUCGga--UGuaGUGGGGU----CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 152503 0.67 0.828973
Target:  5'- --aAUAGCC-GCG-CGCCCCggcgGGGGCGg -3'
miRNA:   3'- gcaUGUCGGaUGUaGUGGGG----UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 88062 0.67 0.828973
Target:  5'- --gGCGGgCU-CGUC-CCCUGGGGCGg -3'
miRNA:   3'- gcaUGUCgGAuGUAGuGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 134136 0.67 0.820538
Target:  5'- -cUACGGCUcccccgACGUCucggcCCCCGGGGCc -3'
miRNA:   3'- gcAUGUCGGa-----UGUAGu----GGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 115515 0.67 0.820538
Target:  5'- cCGUACggGGCgUACGUCgcgGCCCCGGccGGCc -3'
miRNA:   3'- -GCAUG--UCGgAUGUAG---UGGGGUC--CCGc -5'
5117 3' -56.8 NC_001798.1 + 34801 0.67 0.820538
Target:  5'- --cGCGGCC--CGggGCCCCGGGGCc -3'
miRNA:   3'- gcaUGUCGGauGUagUGGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 26310 0.67 0.820538
Target:  5'- cCGcUGCGGCCcgucUACGUgGCgCUGGGGCGc -3'
miRNA:   3'- -GC-AUGUCGG----AUGUAgUGgGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 52096 0.67 0.811935
Target:  5'- --cGCAuGaCgUACAUCGCCaCCGGGGCu -3'
miRNA:   3'- gcaUGU-C-GgAUGUAGUGG-GGUCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.