Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5117 | 3' | -56.8 | NC_001798.1 | + | 135345 | 0.66 | 0.889521 |
Target: 5'- gCGUGCGacGCCUGCcccgCGCUCCGGcagcugcucGGCGg -3' miRNA: 3'- -GCAUGU--CGGAUGua--GUGGGGUC---------CCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 65640 | 0.66 | 0.889521 |
Target: 5'- --cACGGCCcgaACGUCGCUgugCCAGGGUu -3' miRNA: 3'- gcaUGUCGGa--UGUAGUGG---GGUCCCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 44803 | 0.66 | 0.895484 |
Target: 5'- uCGUgaucGCAGUCUuccgucccCAUCGCCCCugcgaacccggagGGGGUGg -3' miRNA: 3'- -GCA----UGUCGGAu-------GUAGUGGGG-------------UCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 18083 | 0.66 | 0.896136 |
Target: 5'- gGUA-GGCC-ACGUCA-UCCGGGGCGu -3' miRNA: 3'- gCAUgUCGGaUGUAGUgGGGUCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 5015 | 0.66 | 0.896136 |
Target: 5'- cCGcUGCuccGCCgACAUCGCCuccgaCCGGGGUGu -3' miRNA: 3'- -GC-AUGu--CGGaUGUAGUGG-----GGUCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 10480 | 0.66 | 0.875627 |
Target: 5'- uGUACAGaCCgcUGUCcguCUCCAGGGCc -3' miRNA: 3'- gCAUGUC-GGauGUAGu--GGGGUCCCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 53517 | 0.66 | 0.874909 |
Target: 5'- --aGCGGCCUggACAUCcccgacgACCCgGcGGGCGa -3' miRNA: 3'- gcaUGUCGGA--UGUAG-------UGGGgU-CCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 58749 | 0.67 | 0.845305 |
Target: 5'- uCGU-CAGCCcgccgACGaCAacCCCCAGGGUGc -3' miRNA: 3'- -GCAuGUCGGa----UGUaGU--GGGGUCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 38479 | 0.67 | 0.845305 |
Target: 5'- aCGcGCAcGCCgGCAUCGCCCCGGaGUc -3' miRNA: 3'- -GCaUGU-CGGaUGUAGUGGGGUCcCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 25322 | 0.67 | 0.853188 |
Target: 5'- uGga-GGCCUACugCGCCCCGcGGGCc -3' miRNA: 3'- gCaugUCGGAUGuaGUGGGGU-CCCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 49850 | 0.67 | 0.853188 |
Target: 5'- aGUGCGGCg-GCGgaggaaCCCGGGGCGc -3' miRNA: 3'- gCAUGUCGgaUGUagug--GGGUCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 135439 | 0.67 | 0.853188 |
Target: 5'- -uUGCGGUCUGCggCGgCaCCGGGGCu -3' miRNA: 3'- gcAUGUCGGAUGuaGUgG-GGUCCCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 23815 | 0.66 | 0.860873 |
Target: 5'- gGgcCGGCCccCcgC-CCCCGGGGCGc -3' miRNA: 3'- gCauGUCGGauGuaGuGGGGUCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 32675 | 0.66 | 0.860873 |
Target: 5'- --aACAGCCUcuGgAUgACCCCGguGGGCa -3' miRNA: 3'- gcaUGUCGGA--UgUAgUGGGGU--CCCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 75853 | 0.66 | 0.860873 |
Target: 5'- --cGCuGGCCca-GUUugCCCGGGGCGa -3' miRNA: 3'- gcaUG-UCGGaugUAGugGGGUCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 117770 | 0.66 | 0.860873 |
Target: 5'- --cGCGGCC-ACGgccaACCCguGGGCGu -3' miRNA: 3'- gcaUGUCGGaUGUag--UGGGguCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 150307 | 0.66 | 0.86389 |
Target: 5'- uGUGCuugggugucggucugAGCCUGgGUCAUgcgcgaCCGGGGCGc -3' miRNA: 3'- gCAUG---------------UCGGAUgUAGUGg-----GGUCCCGC- -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 73080 | 0.66 | 0.868355 |
Target: 5'- -cUACAGCCUGgG--GCCCCuGGGUc -3' miRNA: 3'- gcAUGUCGGAUgUagUGGGGuCCCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 20111 | 0.66 | 0.868355 |
Target: 5'- cCGUugGucucgagauuGCCaACAUCACaCUCGGGGCc -3' miRNA: 3'- -GCAugU----------CGGaUGUAGUG-GGGUCCCGc -5' |
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5117 | 3' | -56.8 | NC_001798.1 | + | 48359 | 0.66 | 0.868355 |
Target: 5'- --cGCGGCCgccCGgggcCGCCCCgcGGGGCGu -3' miRNA: 3'- gcaUGUCGGau-GUa---GUGGGG--UCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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