miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5118 3' -55 NC_001798.1 + 2364 0.65 0.954963
Target:  5'- gUGAGcUCGGccaCGGC-CCGCGGGGCg- -3'
miRNA:   3'- aGCUC-AGCUa--GCUGaGGUGCCUCGac -5'
5118 3' -55 NC_001798.1 + 105706 0.66 0.937646
Target:  5'- aCGGGggcgacagCGGUCGACacCCA-GGGGCUGu -3'
miRNA:   3'- aGCUCa-------GCUAGCUGa-GGUgCCUCGAC- -5'
5118 3' -55 NC_001798.1 + 42640 0.66 0.937646
Target:  5'- ---cGUgGGUCGugUCCAUGGGGUc- -3'
miRNA:   3'- agcuCAgCUAGCugAGGUGCCUCGac -5'
5118 3' -55 NC_001798.1 + 22497 0.67 0.910706
Target:  5'- aCGGGgCGAUCGuccaCACGGAGCg- -3'
miRNA:   3'- aGCUCaGCUAGCugagGUGCCUCGac -5'
5118 3' -55 NC_001798.1 + 47648 0.67 0.90461
Target:  5'- -aGAGUcCGcgCGACgacuuccgCCGCGGcGCUGg -3'
miRNA:   3'- agCUCA-GCuaGCUGa-------GGUGCCuCGAC- -5'
5118 3' -55 NC_001798.1 + 69377 0.68 0.898281
Target:  5'- cUCGGGUagcgcgcguuccCGGagaCGACUCCGCGGGGUc- -3'
miRNA:   3'- -AGCUCA------------GCUa--GCUGAGGUGCCUCGac -5'
5118 3' -55 NC_001798.1 + 136012 0.68 0.891723
Target:  5'- -gGAGUCGGUCGGCguccCCGUGGAuCUGu -3'
miRNA:   3'- agCUCAGCUAGCUGa---GGUGCCUcGAC- -5'
5118 3' -55 NC_001798.1 + 15581 0.72 0.691227
Target:  5'- gCGGGgaguggCGA-CGACUCCACGGAuGCa- -3'
miRNA:   3'- aGCUCa-----GCUaGCUGAGGUGCCU-CGac -5'
5118 3' -55 NC_001798.1 + 141703 0.97 0.025315
Target:  5'- gUCGAGUCGAUCGA-UCCACGGAGCUGg -3'
miRNA:   3'- -AGCUCAGCUAGCUgAGGUGCCUCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.