miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5118 5' -54.4 NC_001798.1 + 2495 0.78 0.361567
Target:  5'- gGUCAGCGCCGcggggcgcggcggccGCggcgGCGGCGUCGGCg- -3'
miRNA:   3'- -UAGUUGCGGC---------------UGa---UGCCGUAGUCGag -5'
5118 5' -54.4 NC_001798.1 + 2766 0.68 0.841964
Target:  5'- -gCGGCGgCGGCgGCGGCGg-AGCUCa -3'
miRNA:   3'- uaGUUGCgGCUGaUGCCGUagUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 3960 0.69 0.807207
Target:  5'- --aGGCGCCGGaggccgcguCGGCGUCcAGCUCg -3'
miRNA:   3'- uagUUGCGGCUgau------GCCGUAG-UCGAG- -5'
5118 5' -54.4 NC_001798.1 + 4708 0.73 0.616259
Target:  5'- -aCGACGCCGuCcGCGGCA--GGCUCg -3'
miRNA:   3'- uaGUUGCGGCuGaUGCCGUagUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 4751 0.68 0.865962
Target:  5'- -cCGGgGCCGcCUcguCGGCAUCGGCaUCg -3'
miRNA:   3'- uaGUUgCGGCuGAu--GCCGUAGUCG-AG- -5'
5118 5' -54.4 NC_001798.1 + 5442 0.67 0.907861
Target:  5'- cAUUAGCGcCCGGCgcggGCGGCuUCcGCUUc -3'
miRNA:   3'- -UAGUUGC-GGCUGa---UGCCGuAGuCGAG- -5'
5118 5' -54.4 NC_001798.1 + 19319 0.7 0.779361
Target:  5'- uGUCuuCGCUGGCUACGGUcccUCguGGCUCc -3'
miRNA:   3'- -UAGuuGCGGCUGAUGCCGu--AG--UCGAG- -5'
5118 5' -54.4 NC_001798.1 + 23739 0.67 0.907861
Target:  5'- cUgGACGCCGAC-GCGGCcucCGGCg- -3'
miRNA:   3'- uAgUUGCGGCUGaUGCCGua-GUCGag -5'
5118 5' -54.4 NC_001798.1 + 23944 0.66 0.940462
Target:  5'- uGUgGGCGCCGAgCUgggcgacGCGGCG-CAGCa- -3'
miRNA:   3'- -UAgUUGCGGCU-GA-------UGCCGUaGUCGag -5'
5118 5' -54.4 NC_001798.1 + 24450 0.69 0.815279
Target:  5'- ----cCGCCGGCUACGGCGcCGcggggguGCUCg -3'
miRNA:   3'- uaguuGCGGCUGAUGCCGUaGU-------CGAG- -5'
5118 5' -54.4 NC_001798.1 + 24549 0.7 0.769789
Target:  5'- -aCGGCGCCGGCgguggugGCGGCGgcCGGCg- -3'
miRNA:   3'- uaGUUGCGGCUGa------UGCCGUa-GUCGag -5'
5118 5' -54.4 NC_001798.1 + 35582 0.71 0.710001
Target:  5'- -gCGGCGCugcuCGGCUGCGGCcgCgGGCUCc -3'
miRNA:   3'- uaGUUGCG----GCUGAUGCCGuaG-UCGAG- -5'
5118 5' -54.4 NC_001798.1 + 46486 0.67 0.910346
Target:  5'- -aCGGCGCCaACUGCGGaAaccggugcagggagcUCGGCUCg -3'
miRNA:   3'- uaGUUGCGGcUGAUGCCgU---------------AGUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 53099 0.69 0.833555
Target:  5'- -gCAACGCCgGGCgcGCGGCGcgAGCUCc -3'
miRNA:   3'- uaGUUGCGG-CUGa-UGCCGUagUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 53311 0.69 0.798079
Target:  5'- -gCAGCGuCCGGCUgGCGGCG-CGGCa- -3'
miRNA:   3'- uaGUUGC-GGCUGA-UGCCGUaGUCGag -5'
5118 5' -54.4 NC_001798.1 + 54658 0.66 0.94094
Target:  5'- -gCAGCgGCCGGCagccGCGGCGcgcccgcucgCGGCUCa -3'
miRNA:   3'- uaGUUG-CGGCUGa---UGCCGUa---------GUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 62333 0.66 0.919888
Target:  5'- ---uACGCUGACcGCGGCcccgGUCGGcCUCg -3'
miRNA:   3'- uaguUGCGGCUGaUGCCG----UAGUC-GAG- -5'
5118 5' -54.4 NC_001798.1 + 66147 0.76 0.418194
Target:  5'- uUCAGCGCCGACUGCaGCccCcGCUCg -3'
miRNA:   3'- uAGUUGCGGCUGAUGcCGuaGuCGAG- -5'
5118 5' -54.4 NC_001798.1 + 75218 0.69 0.807207
Target:  5'- -cCGGCGCCGACc-UGGCG-CAGCUg -3'
miRNA:   3'- uaGUUGCGGCUGauGCCGUaGUCGAg -5'
5118 5' -54.4 NC_001798.1 + 76466 0.69 0.816168
Target:  5'- cAUCAACGaCCaGCaggcGCGGCG-CAGCUCg -3'
miRNA:   3'- -UAGUUGC-GGcUGa---UGCCGUaGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.