miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5118 5' -54.4 NC_001798.1 + 4751 0.68 0.865962
Target:  5'- -cCGGgGCCGcCUcguCGGCAUCGGCaUCg -3'
miRNA:   3'- uaGUUgCGGCuGAu--GCCGUAGUCG-AG- -5'
5118 5' -54.4 NC_001798.1 + 78033 0.68 0.880868
Target:  5'- gGUCGACGCCGAgccccUGGCG-CGGCUg -3'
miRNA:   3'- -UAGUUGCGGCUgau--GCCGUaGUCGAg -5'
5118 5' -54.4 NC_001798.1 + 23739 0.67 0.907861
Target:  5'- cUgGACGCCGAC-GCGGCcucCGGCg- -3'
miRNA:   3'- uAgUUGCGGCUGaUGCCGua-GUCGag -5'
5118 5' -54.4 NC_001798.1 + 131352 0.67 0.913999
Target:  5'- -gCGACGUCGGCgccCGGCG-CGGcCUCg -3'
miRNA:   3'- uaGUUGCGGCUGau-GCCGUaGUC-GAG- -5'
5118 5' -54.4 NC_001798.1 + 46486 0.67 0.910346
Target:  5'- -aCGGCGCCaACUGCGGaAaccggugcagggagcUCGGCUCg -3'
miRNA:   3'- uaGUUGCGGcUGAUGCCgU---------------AGUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 5442 0.67 0.907861
Target:  5'- cAUUAGCGcCCGGCgcggGCGGCuUCcGCUUc -3'
miRNA:   3'- -UAGUUGC-GGCUGa---UGCCGuAGuCGAG- -5'
5118 5' -54.4 NC_001798.1 + 128489 0.67 0.907234
Target:  5'- -aCAACGCCaGcCUGCGGCuggacgcccagucGUCGGCg- -3'
miRNA:   3'- uaGUUGCGG-CuGAUGCCG-------------UAGUCGag -5'
5118 5' -54.4 NC_001798.1 + 109091 0.67 0.901476
Target:  5'- ----cCGCCGACaACGGC-UCGGCg- -3'
miRNA:   3'- uaguuGCGGCUGaUGCCGuAGUCGag -5'
5118 5' -54.4 NC_001798.1 + 137975 0.66 0.94094
Target:  5'- -cCAGCGCCcccGCcuggGCGcGCcgCAGCUCg -3'
miRNA:   3'- uaGUUGCGGc--UGa---UGC-CGuaGUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 62333 0.66 0.919888
Target:  5'- ---uACGCUGACcGCGGCcccgGUCGGcCUCg -3'
miRNA:   3'- uaguUGCGGCUGaUGCCG----UAGUC-GAG- -5'
5118 5' -54.4 NC_001798.1 + 128081 0.66 0.919888
Target:  5'- -cCGAC-CCGAUgugguCGGCGUCGGCg- -3'
miRNA:   3'- uaGUUGcGGCUGau---GCCGUAGUCGag -5'
5118 5' -54.4 NC_001798.1 + 89751 0.66 0.936052
Target:  5'- -aCGGCcUCGGCgACGGCGUuCAGCUUg -3'
miRNA:   3'- uaGUUGcGGCUGaUGCCGUA-GUCGAG- -5'
5118 5' -54.4 NC_001798.1 + 149970 0.66 0.936052
Target:  5'- --aGACGCCGACgGgGGCG-CGGCg- -3'
miRNA:   3'- uagUUGCGGCUGaUgCCGUaGUCGag -5'
5118 5' -54.4 NC_001798.1 + 23944 0.66 0.940462
Target:  5'- uGUgGGCGCCGAgCUgggcgacGCGGCG-CAGCa- -3'
miRNA:   3'- -UAgUUGCGGCU-GA-------UGCCGUaGUCGag -5'
5118 5' -54.4 NC_001798.1 + 54658 0.66 0.94094
Target:  5'- -gCAGCgGCCGGCagccGCGGCGcgcccgcucgCGGCUCa -3'
miRNA:   3'- uaGUUG-CGGCUGa---UGCCGUa---------GUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.