miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 3' -53.8 NC_001798.1 + 151587 0.66 0.960958
Target:  5'- gGGCGUGgg--GCUGCC-CUgGCGCUCg -3'
miRNA:   3'- -CUGCACaagaUGACGGuGA-UGCGGGa -5'
5119 3' -53.8 NC_001798.1 + 122772 0.66 0.960958
Target:  5'- cGACGcGUUCUuucacaCCGCgUACGCCCUg -3'
miRNA:   3'- -CUGCaCAAGAugac--GGUG-AUGCGGGA- -5'
5119 3' -53.8 NC_001798.1 + 133353 0.66 0.960958
Target:  5'- gGACGUGcuggagCUGCUGaacccCCACUACGaCCg -3'
miRNA:   3'- -CUGCACaa----GAUGAC-----GGUGAUGCgGGa -5'
5119 3' -53.8 NC_001798.1 + 35441 0.66 0.960958
Target:  5'- aGGCGUGggCcGCUGgCGCcGCGgCCCg -3'
miRNA:   3'- -CUGCACaaGaUGACgGUGaUGC-GGGa -5'
5119 3' -53.8 NC_001798.1 + 132830 0.66 0.957247
Target:  5'- uGCG-GUUCUGggGCCACgACGCCg- -3'
miRNA:   3'- cUGCaCAAGAUgaCGGUGaUGCGGga -5'
5119 3' -53.8 NC_001798.1 + 48144 0.67 0.924528
Target:  5'- cGCGUcUUCUGC-GCCGCggucggGCGCCUg -3'
miRNA:   3'- cUGCAcAAGAUGaCGGUGa-----UGCGGGa -5'
5119 3' -53.8 NC_001798.1 + 60159 0.67 0.929942
Target:  5'- uGGCGUug---GCgGCCGCUugGCCCg -3'
miRNA:   3'- -CUGCAcaagaUGaCGGUGAugCGGGa -5'
5119 3' -53.8 NC_001798.1 + 116771 0.68 0.912953
Target:  5'- cGACG-GcgCUGCUGugcuCCGCgGCGCCCg -3'
miRNA:   3'- -CUGCaCaaGAUGAC----GGUGaUGCGGGa -5'
5119 3' -53.8 NC_001798.1 + 129753 0.71 0.778298
Target:  5'- cGACGUGgcccgccCUcCUGCCACgcucACGCCCc -3'
miRNA:   3'- -CUGCACaa-----GAuGACGGUGa---UGCGGGa -5'
5119 3' -53.8 NC_001798.1 + 97070 0.82 0.228151
Target:  5'- uGACGUGUUUcag-GCCACUACGCCCg -3'
miRNA:   3'- -CUGCACAAGaugaCGGUGAUGCGGGa -5'
5119 3' -53.8 NC_001798.1 + 141285 1.07 0.005909
Target:  5'- gGACGUGUUCUACUGCCACUACGCCCUc -3'
miRNA:   3'- -CUGCACAAGAUGACGGUGAUGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.