miRNA display CGI


Results 41 - 60 of 398 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5119 5' -61.9 NC_001798.1 + 3375 0.66 0.702181
Target:  5'- cGucGCCGCCGUcGUCGggggUUCGCGCCCc -3'
miRNA:   3'- aCucUGGUGGCGcCGGC----AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 69226 0.66 0.702181
Target:  5'- -aGGAgCGCCcCGGCCGgcUCCGCGUUUg -3'
miRNA:   3'- acUCUgGUGGcGCCGGC--AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 72720 0.66 0.702181
Target:  5'- --uGGCCAUCGUgucgGGCa-UCCACGCCa -3'
miRNA:   3'- acuCUGGUGGCG----CCGgcAGGUGCGGg -5'
5119 5' -61.9 NC_001798.1 + 122384 0.66 0.702181
Target:  5'- --cGcCCcCCGCGGCUGUCCuccgagcuggccACgGCCCu -3'
miRNA:   3'- acuCuGGuGGCGCCGGCAGG------------UG-CGGG- -5'
5119 5' -61.9 NC_001798.1 + 125552 0.66 0.702181
Target:  5'- -cAGGcCCGCCGaCGcCuCGUCgACGCCCa -3'
miRNA:   3'- acUCU-GGUGGC-GCcG-GCAGgUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 100857 0.66 0.702181
Target:  5'- gUGGGGCUGCUGguccUGGCCGgCCugGUCg -3'
miRNA:   3'- -ACUCUGGUGGC----GCCGGCaGGugCGGg -5'
5119 5' -61.9 NC_001798.1 + 76874 0.66 0.702181
Target:  5'- cUGGcGACC-CUGCgGGCC-UCCcUGCCCg -3'
miRNA:   3'- -ACU-CUGGuGGCG-CCGGcAGGuGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 28648 0.66 0.692603
Target:  5'- -cGGGCCgACCGCGaCCGguUCCgGCGCCg -3'
miRNA:   3'- acUCUGG-UGGCGCcGGC--AGG-UGCGGg -5'
5119 5' -61.9 NC_001798.1 + 32562 0.66 0.692603
Target:  5'- -cGGACCugcugcggGCCGCGGCCc-CCGCGUggagCCg -3'
miRNA:   3'- acUCUGG--------UGGCGCCGGcaGGUGCG----GG- -5'
5119 5' -61.9 NC_001798.1 + 68100 0.66 0.692603
Target:  5'- uUGAGACggaCGCaCGgGGCCG-CgCACGgCCa -3'
miRNA:   3'- -ACUCUG---GUG-GCgCCGGCaG-GUGCgGG- -5'
5119 5' -61.9 NC_001798.1 + 123716 0.66 0.692603
Target:  5'- cGAGcgccGCUACUGCGccaCCGUCCACcUCCg -3'
miRNA:   3'- aCUC----UGGUGGCGCc--GGCAGGUGcGGG- -5'
5119 5' -61.9 NC_001798.1 + 127742 0.66 0.692603
Target:  5'- aUGcGGCCGCCGCaacacCCGgcgCCaaGCGCCCc -3'
miRNA:   3'- -ACuCUGGUGGCGcc---GGCa--GG--UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 39914 0.66 0.692603
Target:  5'- uUGGGAaCGCCGCgucgauGGCC-UCCGC-CCCu -3'
miRNA:   3'- -ACUCUgGUGGCG------CCGGcAGGUGcGGG- -5'
5119 5' -61.9 NC_001798.1 + 58018 0.66 0.692603
Target:  5'- --cGACCGCCgGCucGCCGccaUCCGCGgCCg -3'
miRNA:   3'- acuCUGGUGG-CGc-CGGC---AGGUGCgGG- -5'
5119 5' -61.9 NC_001798.1 + 151856 0.66 0.692603
Target:  5'- cGGGACCcCCGC-GCCGUgucccCCGUGUCCc -3'
miRNA:   3'- aCUCUGGuGGCGcCGGCA-----GGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 150377 0.66 0.692603
Target:  5'- -cGGGCgGCgCGggccCGGCCGcgUCCGCGCUCg -3'
miRNA:   3'- acUCUGgUG-GC----GCCGGC--AGGUGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 135545 0.66 0.69644
Target:  5'- cGAGGCguCCGUGcgcGCCGUaCUuucggccaacggcauACGCCCg -3'
miRNA:   3'- aCUCUGguGGCGC---CGGCA-GG---------------UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 15108 0.66 0.699313
Target:  5'- cGAGGCCGguggcgcugUCGuCGuccucgggggguucGCCGUCCccgGCGCCCu -3'
miRNA:   3'- aCUCUGGU---------GGC-GC--------------CGGCAGG---UGCGGG- -5'
5119 5' -61.9 NC_001798.1 + 58919 0.66 0.701226
Target:  5'- cGAGGCUccacaggGCCaCGGCCGcUCCccCGCCg -3'
miRNA:   3'- aCUCUGG-------UGGcGCCGGC-AGGu-GCGGg -5'
5119 5' -61.9 NC_001798.1 + 76703 0.66 0.702181
Target:  5'- gGAGGCgCGCuCcCGGCuucgggagcgCGcCCACGCCCu -3'
miRNA:   3'- aCUCUG-GUG-GcGCCG----------GCaGGUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.