miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 140671 1.08 0.002145
Target:  5'- uCGACGGCUCACGCAGCAACCCACGCUg -3'
miRNA:   3'- -GCUGCCGAGUGCGUCGUUGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 109772 0.83 0.110755
Target:  5'- cCGACG--UCGCGCGGCGACCCACGCc -3'
miRNA:   3'- -GCUGCcgAGUGCGUCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 74036 0.79 0.188375
Target:  5'- cCGGCGGC--GCGCGGCGGCCUGCGUUg -3'
miRNA:   3'- -GCUGCCGagUGCGUCGUUGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 149461 0.78 0.223422
Target:  5'- gCGGCGGCUcCACGCGggggccGCGGCCCGCaGCa -3'
miRNA:   3'- -GCUGCCGA-GUGCGU------CGUUGGGUG-CGa -5'
5120 3' -58.3 NC_001798.1 + 53366 0.77 0.257738
Target:  5'- aGACgGGCUCGC-CAGCGACCCGCaCUa -3'
miRNA:   3'- gCUG-CCGAGUGcGUCGUUGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 154415 0.76 0.276456
Target:  5'- gCGGCGGCgggCGgGCGGCAGggcagcCCCGCGCg -3'
miRNA:   3'- -GCUGCCGa--GUgCGUCGUU------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 77 0.76 0.276456
Target:  5'- gCGGCGGCgggCGgGCGGCAGggcagcCCCGCGCg -3'
miRNA:   3'- -GCUGCCGa--GUgCGUCGUU------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 62803 0.75 0.310039
Target:  5'- cCGAcCGGUUUcugGCGCAGCugugGGCCCACGCg -3'
miRNA:   3'- -GCU-GCCGAG---UGCGUCG----UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 69004 0.75 0.310039
Target:  5'- uCGGCGGCgUCGCGCgcaucguaggcGGCGGCgCACGCg -3'
miRNA:   3'- -GCUGCCG-AGUGCG-----------UCGUUGgGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 34578 0.75 0.310039
Target:  5'- gGACGGCUCACGCGGCG--CgGCGUc -3'
miRNA:   3'- gCUGCCGAGUGCGUCGUugGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 112530 0.75 0.317117
Target:  5'- cCGugGGUugcucUCGCGCGuGCcGCCCGCGCg -3'
miRNA:   3'- -GCugCCG-----AGUGCGU-CGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 16976 0.75 0.324316
Target:  5'- -aGCGGCagGCGCAGCAACUC-CGCg -3'
miRNA:   3'- gcUGCCGagUGCGUCGUUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 153224 0.75 0.345877
Target:  5'- cCGACGGCccgggCcCGCGGCGgcggaggACCCGCGCg -3'
miRNA:   3'- -GCUGCCGa----GuGCGUCGU-------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 146592 0.74 0.35432
Target:  5'- aGACgGGC-CGCGgcgcCAGCGGCCCACGCc -3'
miRNA:   3'- gCUG-CCGaGUGC----GUCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 3493 0.74 0.37004
Target:  5'- gCGGCGGCUCAUGgccaCGGCGGCCgcCACGUg -3'
miRNA:   3'- -GCUGCCGAGUGC----GUCGUUGG--GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 153764 0.74 0.378077
Target:  5'- gGGCGGaaggggGCGCuGCGGCCCGCGCUc -3'
miRNA:   3'- gCUGCCgag---UGCGuCGUUGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 76528 0.74 0.38623
Target:  5'- uCGACGcggcGCUCGCGCAGCAGCUgGacaGCg -3'
miRNA:   3'- -GCUGC----CGAGUGCGUCGUUGGgUg--CGa -5'
5120 3' -58.3 NC_001798.1 + 107427 0.73 0.41998
Target:  5'- uGACGGgggUCGCcGCGGCGACCC-CGCg -3'
miRNA:   3'- gCUGCCg--AGUG-CGUCGUUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 36611 0.73 0.41998
Target:  5'- gCGGCGGCcgggcgggggCGCGCGGCGGCCgggcgggggCGCGCUu -3'
miRNA:   3'- -GCUGCCGa---------GUGCGUCGUUGG---------GUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 141582 0.73 0.428692
Target:  5'- gCGGCGGCggCACGCGaCGGCCgGCGUg -3'
miRNA:   3'- -GCUGCCGa-GUGCGUcGUUGGgUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.