Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5120 | 3' | -58.3 | NC_001798.1 | + | 77 | 0.76 | 0.276456 |
Target: 5'- gCGGCGGCgggCGgGCGGCAGggcagcCCCGCGCg -3' miRNA: 3'- -GCUGCCGa--GUgCGUCGUU------GGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 410 | 0.68 | 0.710457 |
Target: 5'- cCGcCGaGCUCGCgGCAGCcccuccccCCCGCGCg -3' miRNA: 3'- -GCuGC-CGAGUG-CGUCGuu------GGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 535 | 0.66 | 0.821312 |
Target: 5'- -cGCGGCcccgagCuCGCAGCAGCCCcucccucccGCGCc -3' miRNA: 3'- gcUGCCGa-----GuGCGUCGUUGGG---------UGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 1308 | 0.72 | 0.455453 |
Target: 5'- ---gGGCUCGaGCAGC-GCCCGCGCg -3' miRNA: 3'- gcugCCGAGUgCGUCGuUGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 1371 | 0.67 | 0.739634 |
Target: 5'- gCGcACGGCgUCGCGCccCAGCgCCACGUa -3' miRNA: 3'- -GC-UGCCG-AGUGCGucGUUG-GGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 1400 | 0.66 | 0.812796 |
Target: 5'- aGACgGGC-CGCaGCGGCGcGCCCAgGCc -3' miRNA: 3'- gCUG-CCGaGUG-CGUCGU-UGGGUgCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 1643 | 0.68 | 0.691663 |
Target: 5'- gCGGCGGCgcgucgggguacaggCGCGCGugcGCGGCCucCACGCg -3' miRNA: 3'- -GCUGCCGa--------------GUGCGU---CGUUGG--GUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2275 | 0.72 | 0.492481 |
Target: 5'- gGGCGGCgcagCGCGCGGCcagcgaggccAGCgCGCGCg -3' miRNA: 3'- gCUGCCGa---GUGCGUCG----------UUGgGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2440 | 0.68 | 0.680699 |
Target: 5'- cCGGCGGCUgGCGgcgcCAGCcGCCC-UGCg -3' miRNA: 3'- -GCUGCCGAgUGC----GUCGuUGGGuGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2524 | 0.66 | 0.828834 |
Target: 5'- gCGGCGGCgUCggcggggcgggggGCGCGGCc-CCCGCGg- -3' miRNA: 3'- -GCUGCCG-AG-------------UGCGUCGuuGGGUGCga -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2566 | 0.7 | 0.600226 |
Target: 5'- gGGCGGC-CGCGgGGCGGggggcgUCCGCGCg -3' miRNA: 3'- gCUGCCGaGUGCgUCGUU------GGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2793 | 0.7 | 0.610282 |
Target: 5'- aGGCgcgGGCUC-CGCGGCAGCgCCGgGCc -3' miRNA: 3'- gCUG---CCGAGuGCGUCGUUG-GGUgCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2853 | 0.66 | 0.804121 |
Target: 5'- aCGGCGGC-CACG--GCGGCCU-CGCUg -3' miRNA: 3'- -GCUGCCGaGUGCguCGUUGGGuGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2877 | 0.7 | 0.590193 |
Target: 5'- cCGcCGGC-CACGC-GCAGgucCCCGCGCa -3' miRNA: 3'- -GCuGCCGaGUGCGuCGUU---GGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 3121 | 0.69 | 0.620354 |
Target: 5'- -cACGGC-CACGCGGCccgccUCCGCGCg -3' miRNA: 3'- gcUGCCGaGUGCGUCGuu---GGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 3240 | 0.66 | 0.794404 |
Target: 5'- gGGCGGCgagCAccccCGCGGCGccguagccggcggGCaCCGCGCg -3' miRNA: 3'- gCUGCCGa--GU----GCGUCGU-------------UG-GGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 3389 | 0.67 | 0.74919 |
Target: 5'- uCGGgGGUUCGCGCcccGGuCAGCgCCGCGUUc -3' miRNA: 3'- -GCUgCCGAGUGCG---UC-GUUG-GGUGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 3493 | 0.74 | 0.37004 |
Target: 5'- gCGGCGGCUCAUGgccaCGGCGGCCgcCACGUg -3' miRNA: 3'- -GCUGCCGAGUGC----GUCGUUGG--GUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 3854 | 0.67 | 0.767992 |
Target: 5'- gGGCGGCUguCGCc-CAGCCCGcCGUa -3' miRNA: 3'- gCUGCCGAguGCGucGUUGGGU-GCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 4056 | 0.66 | 0.804121 |
Target: 5'- cCGGCGGCgcuccaGGCGGCCCGCGg- -3' miRNA: 3'- -GCUGCCGagugcgUCGUUGGGUGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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