miRNA display CGI


Results 1 - 20 of 179 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 77 0.76 0.276456
Target:  5'- gCGGCGGCgggCGgGCGGCAGggcagcCCCGCGCg -3'
miRNA:   3'- -GCUGCCGa--GUgCGUCGUU------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 410 0.68 0.710457
Target:  5'- cCGcCGaGCUCGCgGCAGCcccuccccCCCGCGCg -3'
miRNA:   3'- -GCuGC-CGAGUG-CGUCGuu------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 535 0.66 0.821312
Target:  5'- -cGCGGCcccgagCuCGCAGCAGCCCcucccucccGCGCc -3'
miRNA:   3'- gcUGCCGa-----GuGCGUCGUUGGG---------UGCGa -5'
5120 3' -58.3 NC_001798.1 + 1308 0.72 0.455453
Target:  5'- ---gGGCUCGaGCAGC-GCCCGCGCg -3'
miRNA:   3'- gcugCCGAGUgCGUCGuUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 1371 0.67 0.739634
Target:  5'- gCGcACGGCgUCGCGCccCAGCgCCACGUa -3'
miRNA:   3'- -GC-UGCCG-AGUGCGucGUUG-GGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 1400 0.66 0.812796
Target:  5'- aGACgGGC-CGCaGCGGCGcGCCCAgGCc -3'
miRNA:   3'- gCUG-CCGaGUG-CGUCGU-UGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 1643 0.68 0.691663
Target:  5'- gCGGCGGCgcgucgggguacaggCGCGCGugcGCGGCCucCACGCg -3'
miRNA:   3'- -GCUGCCGa--------------GUGCGU---CGUUGG--GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 2275 0.72 0.492481
Target:  5'- gGGCGGCgcagCGCGCGGCcagcgaggccAGCgCGCGCg -3'
miRNA:   3'- gCUGCCGa---GUGCGUCG----------UUGgGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 2440 0.68 0.680699
Target:  5'- cCGGCGGCUgGCGgcgcCAGCcGCCC-UGCg -3'
miRNA:   3'- -GCUGCCGAgUGC----GUCGuUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 2524 0.66 0.828834
Target:  5'- gCGGCGGCgUCggcggggcgggggGCGCGGCc-CCCGCGg- -3'
miRNA:   3'- -GCUGCCG-AG-------------UGCGUCGuuGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 2566 0.7 0.600226
Target:  5'- gGGCGGC-CGCGgGGCGGggggcgUCCGCGCg -3'
miRNA:   3'- gCUGCCGaGUGCgUCGUU------GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 2793 0.7 0.610282
Target:  5'- aGGCgcgGGCUC-CGCGGCAGCgCCGgGCc -3'
miRNA:   3'- gCUG---CCGAGuGCGUCGUUG-GGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 2853 0.66 0.804121
Target:  5'- aCGGCGGC-CACG--GCGGCCU-CGCUg -3'
miRNA:   3'- -GCUGCCGaGUGCguCGUUGGGuGCGA- -5'
5120 3' -58.3 NC_001798.1 + 2877 0.7 0.590193
Target:  5'- cCGcCGGC-CACGC-GCAGgucCCCGCGCa -3'
miRNA:   3'- -GCuGCCGaGUGCGuCGUU---GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 3121 0.69 0.620354
Target:  5'- -cACGGC-CACGCGGCccgccUCCGCGCg -3'
miRNA:   3'- gcUGCCGaGUGCGUCGuu---GGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 3240 0.66 0.794404
Target:  5'- gGGCGGCgagCAccccCGCGGCGccguagccggcggGCaCCGCGCg -3'
miRNA:   3'- gCUGCCGa--GU----GCGUCGU-------------UG-GGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 3389 0.67 0.74919
Target:  5'- uCGGgGGUUCGCGCcccGGuCAGCgCCGCGUUc -3'
miRNA:   3'- -GCUgCCGAGUGCG---UC-GUUG-GGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 3493 0.74 0.37004
Target:  5'- gCGGCGGCUCAUGgccaCGGCGGCCgcCACGUg -3'
miRNA:   3'- -GCUGCCGAGUGC----GUCGUUGG--GUGCGa -5'
5120 3' -58.3 NC_001798.1 + 3854 0.67 0.767992
Target:  5'- gGGCGGCUguCGCc-CAGCCCGcCGUa -3'
miRNA:   3'- gCUGCCGAguGCGucGUUGGGU-GCGa -5'
5120 3' -58.3 NC_001798.1 + 4056 0.66 0.804121
Target:  5'- cCGGCGGCgcuccaGGCGGCCCGCGg- -3'
miRNA:   3'- -GCUGCCGagugcgUCGUUGGGUGCga -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.