Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5120 | 3' | -58.3 | NC_001798.1 | + | 2524 | 0.66 | 0.828834 |
Target: 5'- gCGGCGGCgUCggcggggcgggggGCGCGGCc-CCCGCGg- -3' miRNA: 3'- -GCUGCCG-AG-------------UGCGUCGuuGGGUGCga -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 23726 | 0.66 | 0.828834 |
Target: 5'- cCGGCGGgUCgagcuggacgccgACGCGGCcuCCgGCGCc -3' miRNA: 3'- -GCUGCCgAG-------------UGCGUCGuuGGgUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 88179 | 0.66 | 0.821312 |
Target: 5'- gGACGGgaccugCGCGCGGCGGgCCAUgaGCUu -3' miRNA: 3'- gCUGCCga----GUGCGUCGUUgGGUG--CGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 535 | 0.66 | 0.821312 |
Target: 5'- -cGCGGCcccgagCuCGCAGCAGCCCcucccucccGCGCc -3' miRNA: 3'- gcUGCCGa-----GuGCGUCGUUGGG---------UGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 16439 | 0.66 | 0.821312 |
Target: 5'- aCGGCGGCUCGcCGCcGCGACacccuCCAUaCUg -3' miRNA: 3'- -GCUGCCGAGU-GCGuCGUUG-----GGUGcGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 150131 | 0.66 | 0.821312 |
Target: 5'- aCGA-GGC-CGCGgGGCccgaguccGACCCGCGCc -3' miRNA: 3'- -GCUgCCGaGUGCgUCG--------UUGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 91503 | 0.66 | 0.821312 |
Target: 5'- --cCGGCUCuuAC-CGGCgGACCCGCGCc -3' miRNA: 3'- gcuGCCGAG--UGcGUCG-UUGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 53128 | 0.66 | 0.812796 |
Target: 5'- -uGCGGCUgGCGCGGUGcCUgACGCc -3' miRNA: 3'- gcUGCCGAgUGCGUCGUuGGgUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 104375 | 0.66 | 0.812796 |
Target: 5'- aGGCGGUUguCGaGGCggUCCGCGUa -3' miRNA: 3'- gCUGCCGAguGCgUCGuuGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 96170 | 0.66 | 0.812796 |
Target: 5'- uGGCGGC-CGCGCccccGGCcgcgguuuccgAGCCCACuGCg -3' miRNA: 3'- gCUGCCGaGUGCG----UCG-----------UUGGGUG-CGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 1400 | 0.66 | 0.812796 |
Target: 5'- aGACgGGC-CGCaGCGGCGcGCCCAgGCc -3' miRNA: 3'- gCUG-CCGaGUG-CGUCGU-UGGGUgCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 52543 | 0.66 | 0.811936 |
Target: 5'- gCGACggGGCUCAuccUGCAGCGGCugcugggCCugGCc -3' miRNA: 3'- -GCUG--CCGAGU---GCGUCGUUG-------GGugCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 90681 | 0.66 | 0.804121 |
Target: 5'- cCGGCGaCUCGCGCAGgGccgccGCCagGCGCUc -3' miRNA: 3'- -GCUGCcGAGUGCGUCgU-----UGGg-UGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 79375 | 0.66 | 0.804121 |
Target: 5'- cCGGCGGCcagacggGCGCgGGCGcggaguccgcGCCCGCGCc -3' miRNA: 3'- -GCUGCCGag-----UGCG-UCGU----------UGGGUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 2853 | 0.66 | 0.804121 |
Target: 5'- aCGGCGGC-CACG--GCGGCCU-CGCUg -3' miRNA: 3'- -GCUGCCGaGUGCguCGUUGGGuGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 4056 | 0.66 | 0.804121 |
Target: 5'- cCGGCGGCgcuccaGGCGGCCCGCGg- -3' miRNA: 3'- -GCUGCCGagugcgUCGUUGGGUGCga -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 22494 | 0.66 | 0.798843 |
Target: 5'- gCGACGGggCgaucguccacacggaGCGCGGCuACCgACGCg -3' miRNA: 3'- -GCUGCCgaG---------------UGCGUCGuUGGgUGCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 80034 | 0.66 | 0.795295 |
Target: 5'- aCGACGuGCuggUCGCGCuGGUGGCCgGCGUUc -3' miRNA: 3'- -GCUGC-CG---AGUGCG-UCGUUGGgUGCGA- -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 52428 | 0.66 | 0.795295 |
Target: 5'- -cGCGGCcguguaCGCGCuGCAcacgGCCCugGCg -3' miRNA: 3'- gcUGCCGa-----GUGCGuCGU----UGGGugCGa -5' |
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5120 | 3' | -58.3 | NC_001798.1 | + | 39082 | 0.66 | 0.794404 |
Target: 5'- --cUGGCgcagCACGCAGUcgcgcauGGCCUugGCUg -3' miRNA: 3'- gcuGCCGa---GUGCGUCG-------UUGGGugCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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