miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 2524 0.66 0.828834
Target:  5'- gCGGCGGCgUCggcggggcgggggGCGCGGCc-CCCGCGg- -3'
miRNA:   3'- -GCUGCCG-AG-------------UGCGUCGuuGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 23726 0.66 0.828834
Target:  5'- cCGGCGGgUCgagcuggacgccgACGCGGCcuCCgGCGCc -3'
miRNA:   3'- -GCUGCCgAG-------------UGCGUCGuuGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 88179 0.66 0.821312
Target:  5'- gGACGGgaccugCGCGCGGCGGgCCAUgaGCUu -3'
miRNA:   3'- gCUGCCga----GUGCGUCGUUgGGUG--CGA- -5'
5120 3' -58.3 NC_001798.1 + 535 0.66 0.821312
Target:  5'- -cGCGGCcccgagCuCGCAGCAGCCCcucccucccGCGCc -3'
miRNA:   3'- gcUGCCGa-----GuGCGUCGUUGGG---------UGCGa -5'
5120 3' -58.3 NC_001798.1 + 16439 0.66 0.821312
Target:  5'- aCGGCGGCUCGcCGCcGCGACacccuCCAUaCUg -3'
miRNA:   3'- -GCUGCCGAGU-GCGuCGUUG-----GGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 150131 0.66 0.821312
Target:  5'- aCGA-GGC-CGCGgGGCccgaguccGACCCGCGCc -3'
miRNA:   3'- -GCUgCCGaGUGCgUCG--------UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 91503 0.66 0.821312
Target:  5'- --cCGGCUCuuAC-CGGCgGACCCGCGCc -3'
miRNA:   3'- gcuGCCGAG--UGcGUCG-UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 53128 0.66 0.812796
Target:  5'- -uGCGGCUgGCGCGGUGcCUgACGCc -3'
miRNA:   3'- gcUGCCGAgUGCGUCGUuGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 104375 0.66 0.812796
Target:  5'- aGGCGGUUguCGaGGCggUCCGCGUa -3'
miRNA:   3'- gCUGCCGAguGCgUCGuuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 96170 0.66 0.812796
Target:  5'- uGGCGGC-CGCGCccccGGCcgcgguuuccgAGCCCACuGCg -3'
miRNA:   3'- gCUGCCGaGUGCG----UCG-----------UUGGGUG-CGa -5'
5120 3' -58.3 NC_001798.1 + 1400 0.66 0.812796
Target:  5'- aGACgGGC-CGCaGCGGCGcGCCCAgGCc -3'
miRNA:   3'- gCUG-CCGaGUG-CGUCGU-UGGGUgCGa -5'
5120 3' -58.3 NC_001798.1 + 52543 0.66 0.811936
Target:  5'- gCGACggGGCUCAuccUGCAGCGGCugcugggCCugGCc -3'
miRNA:   3'- -GCUG--CCGAGU---GCGUCGUUG-------GGugCGa -5'
5120 3' -58.3 NC_001798.1 + 90681 0.66 0.804121
Target:  5'- cCGGCGaCUCGCGCAGgGccgccGCCagGCGCUc -3'
miRNA:   3'- -GCUGCcGAGUGCGUCgU-----UGGg-UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 79375 0.66 0.804121
Target:  5'- cCGGCGGCcagacggGCGCgGGCGcggaguccgcGCCCGCGCc -3'
miRNA:   3'- -GCUGCCGag-----UGCG-UCGU----------UGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 2853 0.66 0.804121
Target:  5'- aCGGCGGC-CACG--GCGGCCU-CGCUg -3'
miRNA:   3'- -GCUGCCGaGUGCguCGUUGGGuGCGA- -5'
5120 3' -58.3 NC_001798.1 + 4056 0.66 0.804121
Target:  5'- cCGGCGGCgcuccaGGCGGCCCGCGg- -3'
miRNA:   3'- -GCUGCCGagugcgUCGUUGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 22494 0.66 0.798843
Target:  5'- gCGACGGggCgaucguccacacggaGCGCGGCuACCgACGCg -3'
miRNA:   3'- -GCUGCCgaG---------------UGCGUCGuUGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 80034 0.66 0.795295
Target:  5'- aCGACGuGCuggUCGCGCuGGUGGCCgGCGUUc -3'
miRNA:   3'- -GCUGC-CG---AGUGCG-UCGUUGGgUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 52428 0.66 0.795295
Target:  5'- -cGCGGCcguguaCGCGCuGCAcacgGCCCugGCg -3'
miRNA:   3'- gcUGCCGa-----GUGCGuCGU----UGGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 39082 0.66 0.794404
Target:  5'- --cUGGCgcagCACGCAGUcgcgcauGGCCUugGCUg -3'
miRNA:   3'- gcuGCCGa---GUGCGUCG-------UUGGGugCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.