miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 5' -53.4 NC_001798.1 + 3494 0.67 0.933246
Target:  5'- --cGGcGGcUCAUGGCCAcggcggccgccacguGCGCCAGg -3'
miRNA:   3'- uuuUCaCCuAGUGCCGGU---------------UGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 77214 0.67 0.936317
Target:  5'- --cGGUGGA-CGCGGCCGugcgggcgcaugGCGCCc-- -3'
miRNA:   3'- uuuUCACCUaGUGCCGGU------------UGCGGuca -5'
5120 5' -53.4 NC_001798.1 + 130998 0.67 0.941233
Target:  5'- ---uGUGGcAUCGCcauacgGGCCGcCGCCAGg -3'
miRNA:   3'- uuuuCACC-UAGUG------CCGGUuGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 134986 0.67 0.941233
Target:  5'- uGGGGGccUGGccCGCGGUgGGCGCCAGg -3'
miRNA:   3'- -UUUUC--ACCuaGUGCCGgUUGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 1222 0.66 0.945896
Target:  5'- -----cGGccCGCGGCCGACGCCcAGc -3'
miRNA:   3'- uuuucaCCuaGUGCCGGUUGCGG-UCa -5'
5120 5' -53.4 NC_001798.1 + 58103 0.66 0.945896
Target:  5'- -----aGGGUCGCGGCC-GC-CCAGg -3'
miRNA:   3'- uuuucaCCUAGUGCCGGuUGcGGUCa -5'
5120 5' -53.4 NC_001798.1 + 17823 0.66 0.945896
Target:  5'- ---cGUGGAUCGCGaaucCCAGC-CCGGUc -3'
miRNA:   3'- uuuuCACCUAGUGCc---GGUUGcGGUCA- -5'
5120 5' -53.4 NC_001798.1 + 119877 0.66 0.954476
Target:  5'- aAAAAGgccggggGGAUCcCGGUCGGggcCGCCAGg -3'
miRNA:   3'- -UUUUCa------CCUAGuGCCGGUU---GCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 58813 0.66 0.954476
Target:  5'- aAGGGGaUGGAcgUCGuCGGCCAGCaCCAGc -3'
miRNA:   3'- -UUUUC-ACCU--AGU-GCCGGUUGcGGUCa -5'
5120 5' -53.4 NC_001798.1 + 51226 0.66 0.958399
Target:  5'- -cAGGUccGUUACGGCCAGgaGCCAGUc -3'
miRNA:   3'- uuUUCAccUAGUGCCGGUUg-CGGUCA- -5'
5120 5' -53.4 NC_001798.1 + 55966 0.66 0.962084
Target:  5'- -----cGGAaCACGaGCCcGCGCCGGg -3'
miRNA:   3'- uuuucaCCUaGUGC-CGGuUGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 60877 0.66 0.962084
Target:  5'- cGAAGGgGGGcgGCGGCCGcacCGCCGGg -3'
miRNA:   3'- -UUUUCaCCUagUGCCGGUu--GCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 53621 0.66 0.962084
Target:  5'- cAAGAGcGGGgccgcCGCGGCCAaguACGCCGc- -3'
miRNA:   3'- -UUUUCaCCUa----GUGCCGGU---UGCGGUca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.