miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5121 3' -60.7 NC_001798.1 + 2368 0.75 0.253047
Target:  5'- gCUCGGcCACGgccCGCGGGGCGCaguagGCCu -3'
miRNA:   3'- gGAGCCaGUGU---GUGCCCCGCGa----CGGc -5'
5121 3' -60.7 NC_001798.1 + 2478 0.75 0.253047
Target:  5'- cCCUCGGcgggccggcgggUCAgCGcCGCGGGGCGCggcgGCCGc -3'
miRNA:   3'- -GGAGCC------------AGU-GU-GUGCCCCGCGa---CGGC- -5'
5121 3' -60.7 NC_001798.1 + 2602 0.74 0.316655
Target:  5'- uCUUCGGg-GgGCGCGGGGCGCcGCCc -3'
miRNA:   3'- -GGAGCCagUgUGUGCCCCGCGaCGGc -5'
5121 3' -60.7 NC_001798.1 + 2844 0.7 0.495386
Target:  5'- --aCGG-CGCGCACGGcGGCcacggcggccucGCUGCCGc -3'
miRNA:   3'- ggaGCCaGUGUGUGCC-CCG------------CGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 2950 0.68 0.600162
Target:  5'- gCCa-GGcgCGCAgGCGGGGCGC-GUCGg -3'
miRNA:   3'- -GGagCCa-GUGUgUGCCCCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 2996 0.7 0.523284
Target:  5'- cCCgCGGgcccCGgGCGCgGGGGCGCggcggGCCGg -3'
miRNA:   3'- -GGaGCCa---GUgUGUG-CCCCGCGa----CGGC- -5'
5121 3' -60.7 NC_001798.1 + 3768 0.71 0.468183
Target:  5'- gCUCGGgcgccCACACGggcgcCGGGGCGCccgagGCCu -3'
miRNA:   3'- gGAGCCa----GUGUGU-----GCCCCGCGa----CGGc -5'
5121 3' -60.7 NC_001798.1 + 3830 0.71 0.477168
Target:  5'- gCCUCGGgCGCcccccagagGC-CGGGGCGgCUGUCGc -3'
miRNA:   3'- -GGAGCCaGUG---------UGuGCCCCGC-GACGGC- -5'
5121 3' -60.7 NC_001798.1 + 4075 0.71 0.468183
Target:  5'- cCCgCGGUCGC-CGCGGGG-GUccggGCCGg -3'
miRNA:   3'- -GGaGCCAGUGuGUGCCCCgCGa---CGGC- -5'
5121 3' -60.7 NC_001798.1 + 4115 0.66 0.73573
Target:  5'- cCCUgGG-CGgGCucggcCGGGGCGCcGCCc -3'
miRNA:   3'- -GGAgCCaGUgUGu----GCCCCGCGaCGGc -5'
5121 3' -60.7 NC_001798.1 + 4209 0.66 0.73573
Target:  5'- gUCUgCGG-CGCugGCGGGGgCGCgGgCGg -3'
miRNA:   3'- -GGA-GCCaGUGugUGCCCC-GCGaCgGC- -5'
5121 3' -60.7 NC_001798.1 + 4835 0.66 0.763413
Target:  5'- aCC-CGGgcCGCGCgGCGGGGCGacgGuCCGg -3'
miRNA:   3'- -GGaGCCa-GUGUG-UGCCCCGCga-C-GGC- -5'
5121 3' -60.7 NC_001798.1 + 5245 0.7 0.504614
Target:  5'- uCCUCGGg-GCGCGCGGGGCGggGg-- -3'
miRNA:   3'- -GGAGCCagUGUGUGCCCCGCgaCggc -5'
5121 3' -60.7 NC_001798.1 + 8860 0.67 0.658867
Target:  5'- gCCgggaGGUCAUcgcggACGCGgaaGGGCGCUGgCGg -3'
miRNA:   3'- -GGag--CCAGUG-----UGUGC---CCCGCGACgGC- -5'
5121 3' -60.7 NC_001798.1 + 9128 0.67 0.668624
Target:  5'- gCCgcgaggUGGUCuGCgGCACGcGGGCGCggcGCCGc -3'
miRNA:   3'- -GGa-----GCCAG-UG-UGUGC-CCCGCGa--CGGC- -5'
5121 3' -60.7 NC_001798.1 + 9722 0.66 0.73573
Target:  5'- gCUCGGgcugGCGCugGGGGaGgUGCUGu -3'
miRNA:   3'- gGAGCCag--UGUGugCCCCgCgACGGC- -5'
5121 3' -60.7 NC_001798.1 + 10263 0.68 0.639301
Target:  5'- aCCUCGGggauaACACGaGGGUGC-GUCGg -3'
miRNA:   3'- -GGAGCCagug-UGUGC-CCCGCGaCGGC- -5'
5121 3' -60.7 NC_001798.1 + 15809 0.7 0.523284
Target:  5'- uCCUCGGUCAaggcCAUGaGGCGCcGCCc -3'
miRNA:   3'- -GGAGCCAGUgu--GUGCcCCGCGaCGGc -5'
5121 3' -60.7 NC_001798.1 + 20336 0.74 0.316655
Target:  5'- aCCaggUGG-CGCAgGCGGuuGGCGCUGCCGg -3'
miRNA:   3'- -GGa--GCCaGUGUgUGCC--CCGCGACGGC- -5'
5121 3' -60.7 NC_001798.1 + 22337 0.66 0.73573
Target:  5'- aCgCGGaCGCGCGggcguCGGGGCGggGCCGc -3'
miRNA:   3'- gGaGCCaGUGUGU-----GCCCCGCgaCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.