miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 138800 1.11 0.000353
Target:  5'- cGCCCCCAGGCGCUGCGUCGCCUCCCCc -3'
miRNA:   3'- -CGGGGGUCCGCGACGCAGCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 91633 0.66 0.54158
Target:  5'- gGCCgCCCGGGUgaGCgugacgucaaaggggGCGUgGCCgCCCUu -3'
miRNA:   3'- -CGG-GGGUCCG--CGa--------------CGCAgCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 134371 0.66 0.540648
Target:  5'- gGCCCgCCGGcCGCUccucGCGcCGCC-CUCCu -3'
miRNA:   3'- -CGGG-GGUCcGCGA----CGCaGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 55162 0.66 0.540648
Target:  5'- cGCCCCCGGaccaacGCGCUggccaacgacgGCccgacgaacGUCGCCgCCCUc -3'
miRNA:   3'- -CGGGGGUC------CGCGA-----------CG---------CAGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 2785 0.66 0.540648
Target:  5'- aGCUCagCAGGCGCgggcuccGCGgcagCGCCgggcccagggCCCCg -3'
miRNA:   3'- -CGGGg-GUCCGCGa------CGCa---GCGGa---------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 91108 0.66 0.539716
Target:  5'- -aCCCCGGuGCGCUGC-UCcgcggggGCgUCCUCg -3'
miRNA:   3'- cgGGGGUC-CGCGACGcAG-------CGgAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 48986 0.66 0.537853
Target:  5'- cCCCCCAGGCcaGCcggGgGUCccaagaacaccccaGCCgCCCCu -3'
miRNA:   3'- cGGGGGUCCG--CGa--CgCAG--------------CGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 97425 0.66 0.535063
Target:  5'- aGCCCCgAgcagugcgacgaggaGGCGCUGCGcCGCgUgCUg -3'
miRNA:   3'- -CGGGGgU---------------CCGCGACGCaGCGgAgGGg -5'
5123 3' -64.9 NC_001798.1 + 154466 0.66 0.531351
Target:  5'- uCCCCCGgagccGGcCGCUcccccGCGggCGCCgCCCCu -3'
miRNA:   3'- cGGGGGU-----CC-GCGA-----CGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 34993 0.66 0.549061
Target:  5'- gGCCCCUccggccgGGGCGCaccucgGCG--GCCaagCCCCg -3'
miRNA:   3'- -CGGGGG-------UCCGCGa-----CGCagCGGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 140412 0.66 0.549998
Target:  5'- aCCUCaugaAGGUGCUGgaGUacgGCCUUCCCa -3'
miRNA:   3'- cGGGGg---UCCGCGACg-CAg--CGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 3052 0.66 0.549998
Target:  5'- gGCCgCCAGGuCGC--CGUCGaagcCCUCCgCCa -3'
miRNA:   3'- -CGGgGGUCC-GCGacGCAGC----GGAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 86180 0.66 0.549998
Target:  5'- gGCCCC---GCGUuuUGCGcaguUCGCCgagCCCCa -3'
miRNA:   3'- -CGGGGgucCGCG--ACGC----AGCGGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 64633 0.66 0.549998
Target:  5'- cGUgUUgGGGCGCaGCGucUCGCCgUCCCUg -3'
miRNA:   3'- -CGgGGgUCCGCGaCGC--AGCGG-AGGGG- -5'
5123 3' -64.9 NC_001798.1 + 4458 0.66 0.549998
Target:  5'- cGCCCCgCGGacCGCgGaCGUCGUCUCCgguCCg -3'
miRNA:   3'- -CGGGG-GUCc-GCGaC-GCAGCGGAGG---GG- -5'
5123 3' -64.9 NC_001798.1 + 123934 0.66 0.549998
Target:  5'- uGCCCuggguCCGGGgGCcugGUGgCaCCUCCCCg -3'
miRNA:   3'- -CGGG-----GGUCCgCGa--CGCaGcGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 110507 0.66 0.549998
Target:  5'- cGCCCCCGGGUuuCUG-GcCGCgUCCgCg -3'
miRNA:   3'- -CGGGGGUCCGc-GACgCaGCGgAGGgG- -5'
5123 3' -64.9 NC_001798.1 + 79913 0.66 0.549998
Target:  5'- aCCCUCAcGCGCgaguuuggGUGUCGCUgggCCCa -3'
miRNA:   3'- cGGGGGUcCGCGa-------CGCAGCGGa--GGGg -5'
5123 3' -64.9 NC_001798.1 + 78841 0.66 0.549998
Target:  5'- gGCCCCU-GGCGCgGCa-CGCCggCCgCCu -3'
miRNA:   3'- -CGGGGGuCCGCGaCGcaGCGGa-GG-GG- -5'
5123 3' -64.9 NC_001798.1 + 51434 0.66 0.549998
Target:  5'- gGCCCCgGGGCGCg-----GCCUUCCg -3'
miRNA:   3'- -CGGGGgUCCGCGacgcagCGGAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.