miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 112688 0.66 0.531351
Target:  5'- gGCCCuCUGGGUGUUuucuuCGUUuCCUCCCCc -3'
miRNA:   3'- -CGGG-GGUCCGCGAc----GCAGcGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 53183 0.66 0.531351
Target:  5'- cGUCCCCGagcGGCGCaucuucgccggGUGUCuGC-UCCCCa -3'
miRNA:   3'- -CGGGGGU---CCGCGa----------CGCAG-CGgAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 59154 0.66 0.531351
Target:  5'- aCCCaCgCAGGCGagGCGggggCGCCcgucgUCCCCa -3'
miRNA:   3'- cGGG-G-GUCCGCgaCGCa---GCGG-----AGGGG- -5'
5123 3' -64.9 NC_001798.1 + 150340 0.66 0.531351
Target:  5'- cGCgaCCgGGGCGC-GCGgugCGCgUCCaCCg -3'
miRNA:   3'- -CGg-GGgUCCGCGaCGCa--GCGgAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 128 0.66 0.531351
Target:  5'- uCCCCCGgagccGGcCGCUcccccGCGggCGCCgCCCCu -3'
miRNA:   3'- cGGGGGU-----CC-GCGA-----CGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 129660 0.66 0.531351
Target:  5'- uGCCCCCcgacGUGC-GCGUggucacccgggCGCCggggCCCCa -3'
miRNA:   3'- -CGGGGGuc--CGCGaCGCA-----------GCGGa---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 154466 0.66 0.531351
Target:  5'- uCCCCCGgagccGGcCGCUcccccGCGggCGCCgCCCCu -3'
miRNA:   3'- cGGGGGU-----CC-GCGA-----CGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 3775 0.66 0.522113
Target:  5'- cGCCCacaCGGGCGCcGgGgCGCCcgaggCCUCg -3'
miRNA:   3'- -CGGGg--GUCCGCGaCgCaGCGGa----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 132656 0.66 0.522113
Target:  5'- uGCCgCCgguucaaaGGGCGCUGCGaCGCgUCgCa -3'
miRNA:   3'- -CGGgGG--------UCCGCGACGCaGCGgAGgGg -5'
5123 3' -64.9 NC_001798.1 + 91787 0.66 0.5166
Target:  5'- cGCCCCCugccgaugacgcgcgGGGCGUggggaccguggGCGgggcccgaCGCCgCCCCu -3'
miRNA:   3'- -CGGGGG---------------UCCGCGa----------CGCa-------GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 110164 0.66 0.512938
Target:  5'- aGCUuaCGGGCGUUGaCGUCcGCCgCCCg -3'
miRNA:   3'- -CGGggGUCCGCGAC-GCAG-CGGaGGGg -5'
5123 3' -64.9 NC_001798.1 + 44497 0.66 0.512938
Target:  5'- cGCCCUuuCGGGUGgUGgGUCacGCCcacuuccgUCCCCa -3'
miRNA:   3'- -CGGGG--GUCCGCgACgCAG--CGG--------AGGGG- -5'
5123 3' -64.9 NC_001798.1 + 32581 0.66 0.512938
Target:  5'- gGCCCCCGcGUGgaGcCGcCGCacccugCUCCCCg -3'
miRNA:   3'- -CGGGGGUcCGCgaC-GCaGCG------GAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 147016 0.66 0.512938
Target:  5'- aCCCCCGGGCGg-GCcggggcuugGcCGCCgaggugcgCCCCg -3'
miRNA:   3'- cGGGGGUCCGCgaCG---------CaGCGGa-------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 83706 0.66 0.509286
Target:  5'- cGCCCCCuuucauAGGCGC-GCGccaacCGCCcaccagauagcggCCCCc -3'
miRNA:   3'- -CGGGGG------UCCGCGaCGCa----GCGGa------------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 51123 0.66 0.50383
Target:  5'- cGCCCCC--GCGC--CGUCGCCgggaggCCCg -3'
miRNA:   3'- -CGGGGGucCGCGacGCAGCGGa-----GGGg -5'
5123 3' -64.9 NC_001798.1 + 118414 0.66 0.50383
Target:  5'- uCCCCguGcGUGCUGCugaGCCcugCCCCg -3'
miRNA:   3'- cGGGGguC-CGCGACGcagCGGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 87921 0.66 0.50383
Target:  5'- -gCCCCGGGCGaugGCGUacccgggauCCUCCgCCa -3'
miRNA:   3'- cgGGGGUCCGCga-CGCAgc-------GGAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 133756 0.66 0.502016
Target:  5'- cGCCCgCguggGGGCGCUGCuugcgcacgcaCGCCUCCg- -3'
miRNA:   3'- -CGGGgG----UCCGCGACGca---------GCGGAGGgg -5'
5123 3' -64.9 NC_001798.1 + 67140 0.67 0.494792
Target:  5'- cGCCCCUggcaucgcgacGGGCGCaGCacUCGUggCCCCa -3'
miRNA:   3'- -CGGGGG-----------UCCGCGaCGc-AGCGgaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.