miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 110507 0.66 0.549998
Target:  5'- cGCCCCCGGGUuuCUG-GcCGCgUCCgCg -3'
miRNA:   3'- -CGGGGGUCCGc-GACgCaGCGgAGGgG- -5'
5123 3' -64.9 NC_001798.1 + 123934 0.66 0.549998
Target:  5'- uGCCCuggguCCGGGgGCcugGUGgCaCCUCCCCg -3'
miRNA:   3'- -CGGG-----GGUCCgCGa--CGCaGcGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 4458 0.66 0.549998
Target:  5'- cGCCCCgCGGacCGCgGaCGUCGUCUCCgguCCg -3'
miRNA:   3'- -CGGGG-GUCc-GCGaC-GCAGCGGAGG---GG- -5'
5123 3' -64.9 NC_001798.1 + 64633 0.66 0.549998
Target:  5'- cGUgUUgGGGCGCaGCGucUCGCCgUCCCUg -3'
miRNA:   3'- -CGgGGgUCCGCGaCGC--AGCGG-AGGGG- -5'
5123 3' -64.9 NC_001798.1 + 86180 0.66 0.549998
Target:  5'- gGCCCC---GCGUuuUGCGcaguUCGCCgagCCCCa -3'
miRNA:   3'- -CGGGGgucCGCG--ACGC----AGCGGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 55162 0.66 0.540648
Target:  5'- cGCCCCCGGaccaacGCGCUggccaacgacgGCccgacgaacGUCGCCgCCCUc -3'
miRNA:   3'- -CGGGGGUC------CGCGA-----------CG---------CAGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 2785 0.66 0.540648
Target:  5'- aGCUCagCAGGCGCgggcuccGCGgcagCGCCgggcccagggCCCCg -3'
miRNA:   3'- -CGGGg-GUCCGCGa------CGCa---GCGGa---------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 132656 0.66 0.522113
Target:  5'- uGCCgCCgguucaaaGGGCGCUGCGaCGCgUCgCa -3'
miRNA:   3'- -CGGgGG--------UCCGCGACGCaGCGgAGgGg -5'
5123 3' -64.9 NC_001798.1 + 3775 0.66 0.522113
Target:  5'- cGCCCacaCGGGCGCcGgGgCGCCcgaggCCUCg -3'
miRNA:   3'- -CGGGg--GUCCGCGaCgCaGCGGa----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 28093 0.66 0.531351
Target:  5'- cGCUCCUGcGGCGCUG-GcUGCUggugCCCCa -3'
miRNA:   3'- -CGGGGGU-CCGCGACgCaGCGGa---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 112688 0.66 0.531351
Target:  5'- gGCCCuCUGGGUGUUuucuuCGUUuCCUCCCCc -3'
miRNA:   3'- -CGGG-GGUCCGCGAc----GCAGcGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 53183 0.66 0.531351
Target:  5'- cGUCCCCGagcGGCGCaucuucgccggGUGUCuGC-UCCCCa -3'
miRNA:   3'- -CGGGGGU---CCGCGa----------CGCAG-CGgAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 59154 0.66 0.531351
Target:  5'- aCCCaCgCAGGCGagGCGggggCGCCcgucgUCCCCa -3'
miRNA:   3'- cGGG-G-GUCCGCgaCGCa---GCGG-----AGGGG- -5'
5123 3' -64.9 NC_001798.1 + 150340 0.66 0.531351
Target:  5'- cGCgaCCgGGGCGC-GCGgugCGCgUCCaCCg -3'
miRNA:   3'- -CGg-GGgUCCGCGaCGCa--GCGgAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 128 0.66 0.531351
Target:  5'- uCCCCCGgagccGGcCGCUcccccGCGggCGCCgCCCCu -3'
miRNA:   3'- cGGGGGU-----CC-GCGA-----CGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 129660 0.66 0.531351
Target:  5'- uGCCCCCcgacGUGC-GCGUggucacccgggCGCCggggCCCCa -3'
miRNA:   3'- -CGGGGGuc--CGCGaCGCA-----------GCGGa---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 154466 0.66 0.531351
Target:  5'- uCCCCCGgagccGGcCGCUcccccGCGggCGCCgCCCCu -3'
miRNA:   3'- cGGGGGU-----CC-GCGA-----CGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 97425 0.66 0.535063
Target:  5'- aGCCCCgAgcagugcgacgaggaGGCGCUGCGcCGCgUgCUg -3'
miRNA:   3'- -CGGGGgU---------------CCGCGACGCaGCGgAgGGg -5'
5123 3' -64.9 NC_001798.1 + 48986 0.66 0.537853
Target:  5'- cCCCCCAGGCcaGCcggGgGUCccaagaacaccccaGCCgCCCCu -3'
miRNA:   3'- cGGGGGUCCG--CGa--CgCAG--------------CGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 91108 0.66 0.539716
Target:  5'- -aCCCCGGuGCGCUGC-UCcgcggggGCgUCCUCg -3'
miRNA:   3'- cgGGGGUC-CGCGACGcAG-------CGgAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.