miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 3' -52.4 NC_001798.1 + 68972 0.66 0.984213
Target:  5'- -cGUAGUugGUCGUGauGUgGGCCCGGAc- -3'
miRNA:   3'- gcUAUUA--CAGCAU--CAgCCGGGCCUcu -5'
5124 3' -52.4 NC_001798.1 + 3186 0.67 0.975434
Target:  5'- ------cGUCGUcGUCGGCCCcggccggcgcGGAGGc -3'
miRNA:   3'- gcuauuaCAGCAuCAGCCGGG----------CCUCU- -5'
5124 3' -52.4 NC_001798.1 + 105365 0.67 0.975434
Target:  5'- ---cGAUGUCGacgGGcagcucggCGGCCUGGAGGg -3'
miRNA:   3'- gcuaUUACAGCa--UCa-------GCCGGGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 3943 0.67 0.975434
Target:  5'- gCGGUAGcGcgCGUAGaaGGCgCCGGAGGc -3'
miRNA:   3'- -GCUAUUaCa-GCAUCagCCG-GGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 11689 0.67 0.966825
Target:  5'- aCGggGGUGUCGUuguccguggaggGGUgGGUCgGGAGGc -3'
miRNA:   3'- -GCuaUUACAGCA------------UCAgCCGGgCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 74715 0.68 0.948099
Target:  5'- cCGAUGAUGU-GUGGgcagCaGCCCuGGAGGg -3'
miRNA:   3'- -GCUAUUACAgCAUCa---GcCGGG-CCUCU- -5'
5124 3' -52.4 NC_001798.1 + 4906 0.68 0.948099
Target:  5'- cCGGggccgccgGUCGUcuccgccgCGGCCCGGAGAc -3'
miRNA:   3'- -GCUauua----CAGCAuca-----GCCGGGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 102176 0.68 0.952306
Target:  5'- uGAUGGUuUCGUGG--GGCCCGGAa- -3'
miRNA:   3'- gCUAUUAcAGCAUCagCCGGGCCUcu -5'
5124 3' -52.4 NC_001798.1 + 65842 0.68 0.964876
Target:  5'- cCGGUGAUGgcccggaggguggccUgGUAGUggUGGCCUGGGGGu -3'
miRNA:   3'- -GCUAUUAC---------------AgCAUCA--GCCGGGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 36813 0.7 0.917773
Target:  5'- gCGAcgucUGcgGUCuaGUGGUCGGCgUGGGGAc -3'
miRNA:   3'- -GCU----AUuaCAG--CAUCAGCCGgGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 70306 0.7 0.905711
Target:  5'- -----uUGUCGggcgcggcGGUCGGCCCGGcGGAg -3'
miRNA:   3'- gcuauuACAGCa-------UCAGCCGGGCC-UCU- -5'
5124 3' -52.4 NC_001798.1 + 60948 0.7 0.899318
Target:  5'- aCGAggcgcGUCGU-GUCaccgGGCCCGGAGGc -3'
miRNA:   3'- -GCUauua-CAGCAuCAG----CCGGGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 46524 0.7 0.885822
Target:  5'- uCGGUGAggGUCGgggGGgUGGCCCGGAu- -3'
miRNA:   3'- -GCUAUUa-CAGCa--UCaGCCGGGCCUcu -5'
5124 3' -52.4 NC_001798.1 + 82288 0.71 0.871406
Target:  5'- gCGAgccuuUGUgCGguugGGUCGuGCCCGGAGGc -3'
miRNA:   3'- -GCUauu--ACA-GCa---UCAGC-CGGGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 4399 0.73 0.796418
Target:  5'- uGGUGGUGUCGgcGg-GGCgCCGGGGGu -3'
miRNA:   3'- gCUAUUACAGCauCagCCG-GGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 43673 0.77 0.565071
Target:  5'- gCGGggcUGggGUCGUGGguggucaCGGCCCGGAGAu -3'
miRNA:   3'- -GCU---AUuaCAGCAUCa------GCCGGGCCUCU- -5'
5124 3' -52.4 NC_001798.1 + 137881 1.1 0.006707
Target:  5'- uCGAUAAUGUCGUAGUCGGCCCGGAGAa -3'
miRNA:   3'- -GCUAUUACAGCAUCAGCCGGGCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.