Results 61 - 80 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5124 | 5' | -69 | NC_001798.1 | + | 3992 | 0.67 | 0.343539 |
Target: 5'- -aCCGCCgGGGCcGCCCG-GCCgugaagcggCCCg -3' miRNA: 3'- gaGGCGG-CCCGcCGGGCgCGGa--------GGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 55023 | 0.67 | 0.343539 |
Target: 5'- -cCUGCCGGGagacGCCC-CGgaCUCCCCg -3' miRNA: 3'- gaGGCGGCCCgc--CGGGcGCg-GAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 131383 | 0.67 | 0.343539 |
Target: 5'- aUCCcCUGGG-GGCCCG-GCgUCCCa -3' miRNA: 3'- gAGGcGGCCCgCCGGGCgCGgAGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 138727 | 0.67 | 0.343539 |
Target: 5'- -gCC-CCGGGcCGGCgCGCuCCgcggCCCCg -3' miRNA: 3'- gaGGcGGCCC-GCCGgGCGcGGa---GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 9609 | 0.67 | 0.343539 |
Target: 5'- -cCCGa-GGGCGGCCagcaacaGgGCCgCCCCc -3' miRNA: 3'- gaGGCggCCCGCCGGg------CgCGGaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 109709 | 0.67 | 0.342839 |
Target: 5'- cCUCgGCCgagcagcGGGaaCGcGCCCGCcgggGCCUCCUCa -3' miRNA: 3'- -GAGgCGG-------CCC--GC-CGGGCG----CGGAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 1136 | 0.67 | 0.33659 |
Target: 5'- gCUCgCGCCucGGCGGCguggccagccCCGCGgCggUCCCCa -3' miRNA: 3'- -GAG-GCGGc-CCGCCG----------GGCGCgG--AGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 4970 | 0.67 | 0.33659 |
Target: 5'- cCUCgGCCccGCGGCCCuGCGCgUCgUCg -3' miRNA: 3'- -GAGgCGGccCGCCGGG-CGCGgAGgGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 58320 | 0.67 | 0.33659 |
Target: 5'- gCUCCGUCa---GGCCCGcCGCCgcguggCCCCc -3' miRNA: 3'- -GAGGCGGcccgCCGGGC-GCGGa-----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 125540 | 0.67 | 0.33659 |
Target: 5'- -gCCGCCGaGCgucaGGCCCGCcgacGCCUCgUCg -3' miRNA: 3'- gaGGCGGCcCG----CCGGGCG----CGGAGgGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 23600 | 0.67 | 0.33659 |
Target: 5'- -cCCGCCcaGGGcCGaGCCCGCcccgGCCcggacCCCCg -3' miRNA: 3'- gaGGCGG--CCC-GC-CGGGCG----CGGa----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 28855 | 0.67 | 0.33659 |
Target: 5'- -aCCGgCgaGGGCGGCCuCG-GCCggcggagCCCCg -3' miRNA: 3'- gaGGCgG--CCCGCCGG-GCgCGGa------GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 81916 | 0.67 | 0.33659 |
Target: 5'- uUCCGCCcGGCcccgccucGGCUCGCgggGCCUUUCCc -3' miRNA: 3'- gAGGCGGcCCG--------CCGGGCG---CGGAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 153700 | 0.67 | 0.33659 |
Target: 5'- -gCCGCCGGcGCaGGCUcaggCGCGCCagguaCUCCg -3' miRNA: 3'- gaGGCGGCC-CG-CCGG----GCGCGGa----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 21808 | 0.67 | 0.33659 |
Target: 5'- -cCCGCCucgGGGCGgaGCCCGCGggaugaCgcgggCCCCg -3' miRNA: 3'- gaGGCGG---CCCGC--CGGGCGCg-----Ga----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 94456 | 0.67 | 0.334526 |
Target: 5'- -cCCGCCgagagcagcuucgaGGGCGacguuGCCCGCGUgaCCCUu -3' miRNA: 3'- gaGGCGG--------------CCCGC-----CGGGCGCGgaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 2635 | 0.67 | 0.329745 |
Target: 5'- -cCCugGCCgGGGCGGggcucuugcgcuUgCGCGCCUCCCg -3' miRNA: 3'- gaGG--CGG-CCCGCC------------GgGCGCGGAGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 102994 | 0.67 | 0.329745 |
Target: 5'- cCUCCacGCCGGG-GGCCCagguGCGCCcggCCa- -3' miRNA: 3'- -GAGG--CGGCCCgCCGGG----CGCGGa--GGgg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 88094 | 0.67 | 0.329745 |
Target: 5'- gCUCgCGgaGGGCGGCcagCCGCGCgaccguCUCCUCu -3' miRNA: 3'- -GAG-GCggCCCGCCG---GGCGCG------GAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 61864 | 0.67 | 0.329745 |
Target: 5'- -gCCGCCGgcccagcccGGCGGCCCccucggGCGCg-CCCUc -3' miRNA: 3'- gaGGCGGC---------CCGCCGGG------CGCGgaGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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