miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 137031 1.07 0.007181
Target:  5'- gAGGACGACGACCGCAAAACCGCGAUAc -3'
miRNA:   3'- -UCCUGCUGCUGGCGUUUUGGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 60882 0.85 0.188204
Target:  5'- gGGGGCGGCGGCCGCAccGCCGgGAa- -3'
miRNA:   3'- -UCCUGCUGCUGGCGUuuUGGCgCUau -5'
5126 3' -53.4 NC_001798.1 + 150456 0.82 0.272877
Target:  5'- cGGGGCGACGGCCGCGcggGGGCgCGCGGc- -3'
miRNA:   3'- -UCCUGCUGCUGGCGU---UUUG-GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 130680 0.81 0.313751
Target:  5'- cAGGGCGGCGAUCGUguucaacGAGACCGCGGc- -3'
miRNA:   3'- -UCCUGCUGCUGGCG-------UUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 27249 0.8 0.337019
Target:  5'- gGGGA-GGCGGCCGCGGGACCGCa--- -3'
miRNA:   3'- -UCCUgCUGCUGGCGUUUUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 22724 0.8 0.337019
Target:  5'- -cGACGACGACgaCGCAGGGCCGCGGg- -3'
miRNA:   3'- ucCUGCUGCUG--GCGUUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 16435 0.79 0.36071
Target:  5'- gGGGACGGCGGCuCGCc--GCCGCGAc- -3'
miRNA:   3'- -UCCUGCUGCUG-GCGuuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 105393 0.78 0.411467
Target:  5'- gAGGGCGGCGuucuccagggccGCCGCG--GCCGCGGUGc -3'
miRNA:   3'- -UCCUGCUGC------------UGGCGUuuUGGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 51072 0.77 0.456992
Target:  5'- uGGACGACGACaGCGAGgucgagGCCGCGGg- -3'
miRNA:   3'- uCCUGCUGCUGgCGUUU------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 23201 0.77 0.495282
Target:  5'- -uGACGACGACCGCGAcgcgGGCCGCu--- -3'
miRNA:   3'- ucCUGCUGCUGGCGUU----UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 42158 0.76 0.524929
Target:  5'- gAGGACG-CGGaucucCCGCGGGGCCGCGGa- -3'
miRNA:   3'- -UCCUGCuGCU-----GGCGUUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 150127 0.76 0.545063
Target:  5'- gAGGACGA-GGCCGCGGGGCC-CGAg- -3'
miRNA:   3'- -UCCUGCUgCUGGCGUUUUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 26484 0.76 0.555224
Target:  5'- uGGGCGuCGGCCGCG-GGCCGCGcgGg -3'
miRNA:   3'- uCCUGCuGCUGGCGUuUUGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 47765 0.75 0.572621
Target:  5'- cGGACGACGAcgagucccgggauaCCGCGcGACCGCGu-- -3'
miRNA:   3'- uCCUGCUGCU--------------GGCGUuUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 35438 0.75 0.59635
Target:  5'- gGGaGGCGugGGCCGCuggcGCCGCGGc- -3'
miRNA:   3'- -UC-CUGCugCUGGCGuuu-UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 128416 0.75 0.606717
Target:  5'- cGGGGCcuGACGACCGCcuccacGCUGCGGUGg -3'
miRNA:   3'- -UCCUG--CUGCUGGCGuuu---UGGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 88674 0.75 0.606717
Target:  5'- cAGGcCcGCGGCCGUGAGGCCGCGGc- -3'
miRNA:   3'- -UCCuGcUGCUGGCGUUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 52726 0.75 0.606717
Target:  5'- uGGGCgGACGugCGCGccGCCGCGGa- -3'
miRNA:   3'- uCCUG-CUGCugGCGUuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 43646 0.74 0.627502
Target:  5'- aGGGGCGAgGGCUGCuccgugcuGGCCGCGGg- -3'
miRNA:   3'- -UCCUGCUgCUGGCGuu------UUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 119343 0.74 0.648302
Target:  5'- cAGGACGGCGAaCGCAGGcuGCCGCu--- -3'
miRNA:   3'- -UCCUGCUGCUgGCGUUU--UGGCGcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.