miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 43873 0.66 0.964252
Target:  5'- cGGAaacccaGCGGCCGCGGccCCGCGGg- -3'
miRNA:   3'- uCCUgc----UGCUGGCGUUuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 11400 0.66 0.964252
Target:  5'- cGGGCcAUGGCCGCcucguuGACCGCGc-- -3'
miRNA:   3'- uCCUGcUGCUGGCGuu----UUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 58929 0.66 0.964252
Target:  5'- cAGGGCcACGGCCGCucccCCGcCGAc- -3'
miRNA:   3'- -UCCUGcUGCUGGCGuuuuGGC-GCUau -5'
5126 3' -53.4 NC_001798.1 + 108873 0.66 0.964252
Target:  5'- cGGGuGCGACG-CCGCGcucgugcGCgCGCGAUAc -3'
miRNA:   3'- -UCC-UGCUGCuGGCGUuu-----UG-GCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 68106 0.66 0.964252
Target:  5'- cGGACGcACGggGCCGCGcacggccaAGACgGCGAg- -3'
miRNA:   3'- uCCUGC-UGC--UGGCGU--------UUUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 36876 0.66 0.963574
Target:  5'- uGGACuACGACCgaccacacgacauGCAggcuucuGAGCCGCGAa- -3'
miRNA:   3'- uCCUGcUGCUGG-------------CGU-------UUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 24364 0.66 0.960773
Target:  5'- cGGcGACGACGcCCGCGGGaagcccGCCGCc--- -3'
miRNA:   3'- -UC-CUGCUGCuGGCGUUU------UGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 8792 0.66 0.960773
Target:  5'- cGGGACGGgcgaGGCCGCGGggUaaaGCGGc- -3'
miRNA:   3'- -UCCUGCUg---CUGGCGUUuuGg--CGCUau -5'
5126 3' -53.4 NC_001798.1 + 49787 0.66 0.960773
Target:  5'- gAGGccCGGCGACUGCGGGAgcuaaaccacauUCGCGAg- -3'
miRNA:   3'- -UCCu-GCUGCUGGCGUUUU------------GGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 5774 0.66 0.959685
Target:  5'- gGGGGCGG-GGCCGCAGggUaaaagaagugagaaCGCGAa- -3'
miRNA:   3'- -UCCUGCUgCUGGCGUUuuG--------------GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 5636 0.66 0.959685
Target:  5'- gGGGGCGG-GGCCGCAGggUaaaagaagugagaaCGCGAa- -3'
miRNA:   3'- -UCCUGCUgCUGGCGUUuuG--------------GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 90076 0.67 0.958577
Target:  5'- cAGGACGACGgggGCCggcaggccccuggagGCGAGAUCGCuGAg- -3'
miRNA:   3'- -UCCUGCUGC---UGG---------------CGUUUUGGCG-CUau -5'
5126 3' -53.4 NC_001798.1 + 142410 0.67 0.957067
Target:  5'- cGGaguGCGACGGCCGgCAuccuGACgGUGGUGu -3'
miRNA:   3'- uCC---UGCUGCUGGC-GUu---UUGgCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 99188 0.67 0.957067
Target:  5'- cGGGACGACcacgaGACCGaCAuggagcucAAGCCgGCGAa- -3'
miRNA:   3'- -UCCUGCUG-----CUGGC-GU--------UUUGG-CGCUau -5'
5126 3' -53.4 NC_001798.1 + 22766 0.67 0.957067
Target:  5'- cGGACGAgGACgGgGGAcgucuccggGCCGCGGc- -3'
miRNA:   3'- uCCUGCUgCUGgCgUUU---------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 115904 0.67 0.957067
Target:  5'- gGGGcguuCGAgGACCGCAGcuACCcgGCGGUGu -3'
miRNA:   3'- -UCCu---GCUgCUGGCGUUu-UGG--CGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 39123 0.67 0.957067
Target:  5'- cGGcccGCGGguUGGCUGCGAAugUGCGGUAg -3'
miRNA:   3'- uCC---UGCU--GCUGGCGUUUugGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 31365 0.67 0.957067
Target:  5'- cGGGugGGCGaagacGCCGCG--GCgGCGGa- -3'
miRNA:   3'- -UCCugCUGC-----UGGCGUuuUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 93448 0.67 0.953128
Target:  5'- cGuGGCGGCcaacCCGCAGcugGACCGCGAg- -3'
miRNA:   3'- uC-CUGCUGcu--GGCGUU---UUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 36277 0.67 0.953128
Target:  5'- gGGGugGGCGGCgGgGGGggguGCCGUGGg- -3'
miRNA:   3'- -UCCugCUGCUGgCgUUU----UGGCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.