Results 21 - 40 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 43873 | 0.66 | 0.964252 |
Target: 5'- cGGAaacccaGCGGCCGCGGccCCGCGGg- -3' miRNA: 3'- uCCUgc----UGCUGGCGUUuuGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 11400 | 0.66 | 0.964252 |
Target: 5'- cGGGCcAUGGCCGCcucguuGACCGCGc-- -3' miRNA: 3'- uCCUGcUGCUGGCGuu----UUGGCGCuau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 58929 | 0.66 | 0.964252 |
Target: 5'- cAGGGCcACGGCCGCucccCCGcCGAc- -3' miRNA: 3'- -UCCUGcUGCUGGCGuuuuGGC-GCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 108873 | 0.66 | 0.964252 |
Target: 5'- cGGGuGCGACG-CCGCGcucgugcGCgCGCGAUAc -3' miRNA: 3'- -UCC-UGCUGCuGGCGUuu-----UG-GCGCUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 68106 | 0.66 | 0.964252 |
Target: 5'- cGGACGcACGggGCCGCGcacggccaAGACgGCGAg- -3' miRNA: 3'- uCCUGC-UGC--UGGCGU--------UUUGgCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 36876 | 0.66 | 0.963574 |
Target: 5'- uGGACuACGACCgaccacacgacauGCAggcuucuGAGCCGCGAa- -3' miRNA: 3'- uCCUGcUGCUGG-------------CGU-------UUUGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 24364 | 0.66 | 0.960773 |
Target: 5'- cGGcGACGACGcCCGCGGGaagcccGCCGCc--- -3' miRNA: 3'- -UC-CUGCUGCuGGCGUUU------UGGCGcuau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 8792 | 0.66 | 0.960773 |
Target: 5'- cGGGACGGgcgaGGCCGCGGggUaaaGCGGc- -3' miRNA: 3'- -UCCUGCUg---CUGGCGUUuuGg--CGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 49787 | 0.66 | 0.960773 |
Target: 5'- gAGGccCGGCGACUGCGGGAgcuaaaccacauUCGCGAg- -3' miRNA: 3'- -UCCu-GCUGCUGGCGUUUU------------GGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 5774 | 0.66 | 0.959685 |
Target: 5'- gGGGGCGG-GGCCGCAGggUaaaagaagugagaaCGCGAa- -3' miRNA: 3'- -UCCUGCUgCUGGCGUUuuG--------------GCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 5636 | 0.66 | 0.959685 |
Target: 5'- gGGGGCGG-GGCCGCAGggUaaaagaagugagaaCGCGAa- -3' miRNA: 3'- -UCCUGCUgCUGGCGUUuuG--------------GCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 90076 | 0.67 | 0.958577 |
Target: 5'- cAGGACGACGgggGCCggcaggccccuggagGCGAGAUCGCuGAg- -3' miRNA: 3'- -UCCUGCUGC---UGG---------------CGUUUUGGCG-CUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 142410 | 0.67 | 0.957067 |
Target: 5'- cGGaguGCGACGGCCGgCAuccuGACgGUGGUGu -3' miRNA: 3'- uCC---UGCUGCUGGC-GUu---UUGgCGCUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 99188 | 0.67 | 0.957067 |
Target: 5'- cGGGACGACcacgaGACCGaCAuggagcucAAGCCgGCGAa- -3' miRNA: 3'- -UCCUGCUG-----CUGGC-GU--------UUUGG-CGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 22766 | 0.67 | 0.957067 |
Target: 5'- cGGACGAgGACgGgGGAcgucuccggGCCGCGGc- -3' miRNA: 3'- uCCUGCUgCUGgCgUUU---------UGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 115904 | 0.67 | 0.957067 |
Target: 5'- gGGGcguuCGAgGACCGCAGcuACCcgGCGGUGu -3' miRNA: 3'- -UCCu---GCUgCUGGCGUUu-UGG--CGCUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 39123 | 0.67 | 0.957067 |
Target: 5'- cGGcccGCGGguUGGCUGCGAAugUGCGGUAg -3' miRNA: 3'- uCC---UGCU--GCUGGCGUUUugGCGCUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 31365 | 0.67 | 0.957067 |
Target: 5'- cGGGugGGCGaagacGCCGCG--GCgGCGGa- -3' miRNA: 3'- -UCCugCUGC-----UGGCGUuuUGgCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 93448 | 0.67 | 0.953128 |
Target: 5'- cGuGGCGGCcaacCCGCAGcugGACCGCGAg- -3' miRNA: 3'- uC-CUGCUGcu--GGCGUU---UUGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 36277 | 0.67 | 0.953128 |
Target: 5'- gGGGugGGCGGCgGgGGGggguGCCGUGGg- -3' miRNA: 3'- -UCCugCUGCUGgCgUUU----UGGCGCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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