Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5126 | 5' | -51.3 | NC_001798.1 | + | 137066 | 1.07 | 0.009152 |
Target: 5'- gGUCCCCGCAGCGCUUAAAGUAAUCCUc -3' miRNA: 3'- -CAGGGGCGUCGCGAAUUUCAUUAGGA- -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 18135 | 0.74 | 0.712615 |
Target: 5'- --aCCCGCGGCGUccacgaUGGGGUAGUCCUc -3' miRNA: 3'- cagGGGCGUCGCGa-----AUUUCAUUAGGA- -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 66109 | 0.74 | 0.722987 |
Target: 5'- aGUgCCCGCcgaAGCGCUUGAGGUAAaacUCUUc -3' miRNA: 3'- -CAgGGGCG---UCGCGAAUUUCAUU---AGGA- -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 91108 | 0.74 | 0.743464 |
Target: 5'- -aCCCCGguGCGCUgcuccgcGGGGgcGUCCUc -3' miRNA: 3'- caGGGGCguCGCGAa------UUUCauUAGGA- -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 125917 | 0.73 | 0.802016 |
Target: 5'- aGUCCCgCGC-GCGCUUAGAGaUGAUgCg -3' miRNA: 3'- -CAGGG-GCGuCGCGAAUUUC-AUUAgGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 90417 | 0.72 | 0.811246 |
Target: 5'- cGUUCCCGCGGCcggGCUUGAGGcGGUaCCa -3' miRNA: 3'- -CAGGGGCGUCG---CGAAUUUCaUUA-GGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 28372 | 0.71 | 0.859407 |
Target: 5'- cGUCCCCGCccgcggacgcgccGCGCgggAAGGUAcgCCUc -3' miRNA: 3'- -CAGGGGCGu------------CGCGaa-UUUCAUuaGGA- -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 19226 | 0.71 | 0.870403 |
Target: 5'- uUCCCCGCAGCGCcUAAucacccCCUg -3' miRNA: 3'- cAGGGGCGUCGCGaAUUucauuaGGA- -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 16992 | 0.69 | 0.929628 |
Target: 5'- -aCUCCGCGGCGCUUGGgcGGaGcgCCg -3' miRNA: 3'- caGGGGCGUCGCGAAUU--UCaUuaGGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 30576 | 0.69 | 0.944737 |
Target: 5'- -gCCCCGCcccuGCGCUgccAGAGUuuUCCc -3' miRNA: 3'- caGGGGCGu---CGCGAa--UUUCAuuAGGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 27539 | 0.68 | 0.953527 |
Target: 5'- -gCCCCGCGGCGCgcgggggGAGGggcgGcgCCc -3' miRNA: 3'- caGGGGCGUCGCGaa-----UUUCa---UuaGGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 152647 | 0.68 | 0.961322 |
Target: 5'- -gCCCCGcCGGCGCggcccuGAGUGGUgCCc -3' miRNA: 3'- caGGGGC-GUCGCGaau---UUCAUUA-GGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 39840 | 0.68 | 0.964858 |
Target: 5'- cUCCCCGCcGCGCUgccgggcGAGgcGUCg- -3' miRNA: 3'- cAGGGGCGuCGCGAau-----UUCauUAGga -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 105769 | 0.68 | 0.968161 |
Target: 5'- aGUCCCCGC-GCGCccgcg--GGUCCg -3' miRNA: 3'- -CAGGGGCGuCGCGaauuucaUUAGGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 41944 | 0.68 | 0.968161 |
Target: 5'- aUUCCCGCGcGUGCUcgggAAAGUGAgCCUc -3' miRNA: 3'- cAGGGGCGU-CGCGAa---UUUCAUUaGGA- -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 25214 | 0.67 | 0.975177 |
Target: 5'- -gCCCCGCGGCGCUgacccg---CCg -3' miRNA: 3'- caGGGGCGUCGCGAauuucauuaGGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 3252 | 0.67 | 0.976739 |
Target: 5'- -cCCCCGCGGCGCc----GUAG-CCg -3' miRNA: 3'- caGGGGCGUCGCGaauuuCAUUaGGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 149156 | 0.67 | 0.97918 |
Target: 5'- -cCCCCGaGGCGCcucggccGGUGGUCCg -3' miRNA: 3'- caGGGGCgUCGCGaauu---UCAUUAGGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 88721 | 0.67 | 0.981426 |
Target: 5'- uGUCCCCGUAgaugauGCGCaUGGAGUAcggaCCg -3' miRNA: 3'- -CAGGGGCGU------CGCGaAUUUCAUua--GGa -5' |
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5126 | 5' | -51.3 | NC_001798.1 | + | 109022 | 0.66 | 0.985367 |
Target: 5'- -cCCCCGCGGUGCUccccGGgccUCCg -3' miRNA: 3'- caGGGGCGUCGCGAauu-UCauuAGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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