miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 5' -51.3 NC_001798.1 + 137066 1.07 0.009152
Target:  5'- gGUCCCCGCAGCGCUUAAAGUAAUCCUc -3'
miRNA:   3'- -CAGGGGCGUCGCGAAUUUCAUUAGGA- -5'
5126 5' -51.3 NC_001798.1 + 152647 0.68 0.961322
Target:  5'- -gCCCCGcCGGCGCggcccuGAGUGGUgCCc -3'
miRNA:   3'- caGGGGC-GUCGCGaau---UUCAUUA-GGa -5'
5126 5' -51.3 NC_001798.1 + 27539 0.68 0.953527
Target:  5'- -gCCCCGCGGCGCgcgggggGAGGggcgGcgCCc -3'
miRNA:   3'- caGGGGCGUCGCGaa-----UUUCa---UuaGGa -5'
5126 5' -51.3 NC_001798.1 + 30576 0.69 0.944737
Target:  5'- -gCCCCGCcccuGCGCUgccAGAGUuuUCCc -3'
miRNA:   3'- caGGGGCGu---CGCGAa--UUUCAuuAGGa -5'
5126 5' -51.3 NC_001798.1 + 16992 0.69 0.929628
Target:  5'- -aCUCCGCGGCGCUUGGgcGGaGcgCCg -3'
miRNA:   3'- caGGGGCGUCGCGAAUU--UCaUuaGGa -5'
5126 5' -51.3 NC_001798.1 + 19226 0.71 0.870403
Target:  5'- uUCCCCGCAGCGCcUAAucacccCCUg -3'
miRNA:   3'- cAGGGGCGUCGCGaAUUucauuaGGA- -5'
5126 5' -51.3 NC_001798.1 + 28372 0.71 0.859407
Target:  5'- cGUCCCCGCccgcggacgcgccGCGCgggAAGGUAcgCCUc -3'
miRNA:   3'- -CAGGGGCGu------------CGCGaa-UUUCAUuaGGA- -5'
5126 5' -51.3 NC_001798.1 + 90417 0.72 0.811246
Target:  5'- cGUUCCCGCGGCcggGCUUGAGGcGGUaCCa -3'
miRNA:   3'- -CAGGGGCGUCG---CGAAUUUCaUUA-GGa -5'
5126 5' -51.3 NC_001798.1 + 125917 0.73 0.802016
Target:  5'- aGUCCCgCGC-GCGCUUAGAGaUGAUgCg -3'
miRNA:   3'- -CAGGG-GCGuCGCGAAUUUC-AUUAgGa -5'
5126 5' -51.3 NC_001798.1 + 39840 0.68 0.964858
Target:  5'- cUCCCCGCcGCGCUgccgggcGAGgcGUCg- -3'
miRNA:   3'- cAGGGGCGuCGCGAau-----UUCauUAGga -5'
5126 5' -51.3 NC_001798.1 + 105769 0.68 0.968161
Target:  5'- aGUCCCCGC-GCGCccgcg--GGUCCg -3'
miRNA:   3'- -CAGGGGCGuCGCGaauuucaUUAGGa -5'
5126 5' -51.3 NC_001798.1 + 41944 0.68 0.968161
Target:  5'- aUUCCCGCGcGUGCUcgggAAAGUGAgCCUc -3'
miRNA:   3'- cAGGGGCGU-CGCGAa---UUUCAUUaGGA- -5'
5126 5' -51.3 NC_001798.1 + 104458 0.66 0.988635
Target:  5'- gGUCgCCCGCAGCaGCguc---UGGUCCUc -3'
miRNA:   3'- -CAG-GGGCGUCG-CGaauuucAUUAGGA- -5'
5126 5' -51.3 NC_001798.1 + 16323 0.66 0.988032
Target:  5'- uGUCUCCGCGGCGCggucccaGAUCg- -3'
miRNA:   3'- -CAGGGGCGUCGCGaauuucaUUAGga -5'
5126 5' -51.3 NC_001798.1 + 118757 0.66 0.98708
Target:  5'- ---aCCGCAGCGCUUccccgcGGUAAUCa- -3'
miRNA:   3'- caggGGCGUCGCGAAuu----UCAUUAGga -5'
5126 5' -51.3 NC_001798.1 + 109022 0.66 0.985367
Target:  5'- -cCCCCGCGGUGCUccccGGgccUCCg -3'
miRNA:   3'- caGGGGCGUCGCGAauu-UCauuAGGa -5'
5126 5' -51.3 NC_001798.1 + 88721 0.67 0.981426
Target:  5'- uGUCCCCGUAgaugauGCGCaUGGAGUAcggaCCg -3'
miRNA:   3'- -CAGGGGCGU------CGCGaAUUUCAUua--GGa -5'
5126 5' -51.3 NC_001798.1 + 149156 0.67 0.97918
Target:  5'- -cCCCCGaGGCGCcucggccGGUGGUCCg -3'
miRNA:   3'- caGGGGCgUCGCGaauu---UCAUUAGGa -5'
5126 5' -51.3 NC_001798.1 + 3252 0.67 0.976739
Target:  5'- -cCCCCGCGGCGCc----GUAG-CCg -3'
miRNA:   3'- caGGGGCGUCGCGaauuuCAUUaGGa -5'
5126 5' -51.3 NC_001798.1 + 25214 0.67 0.975177
Target:  5'- -gCCCCGCGGCGCUgacccg---CCg -3'
miRNA:   3'- caGGGGCGUCGCGAauuucauuaGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.