miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 125753 0.66 0.751635
Target:  5'- cGCGGCCCugcgCCGACguUugGCCGagacGCACCUc -3'
miRNA:   3'- -UGCUGGG----GGUUG--GugCGGC----UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 105966 0.66 0.761018
Target:  5'- cAC-ACCCCCAcCCucCGCagCGACGCCUa -3'
miRNA:   3'- -UGcUGGGGGUuGGu-GCG--GCUGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 61192 0.66 0.761018
Target:  5'- uCGGCCUgcaCCGGCgCGCGCCGgcgguuGCACCa- -3'
miRNA:   3'- uGCUGGG---GGUUG-GUGCGGC------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 23582 0.66 0.761018
Target:  5'- gGCGGCgCCCCGGCCGaGCCcGC-CCa- -3'
miRNA:   3'- -UGCUG-GGGGUUGGUgCGGcUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 21680 0.66 0.761018
Target:  5'- gUGGCCCCCuucGCgAUGCCGcCGCUg- -3'
miRNA:   3'- uGCUGGGGGu--UGgUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 7780 0.66 0.761018
Target:  5'- cACGACCCaCCGcCCcCGCUGGCgggaGCCa- -3'
miRNA:   3'- -UGCUGGG-GGUuGGuGCGGCUG----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 7182 0.66 0.761018
Target:  5'- -gGGCCCCCGcACCGgGgCGGCgACCa- -3'
miRNA:   3'- ugCUGGGGGU-UGGUgCgGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 3905 0.66 0.761018
Target:  5'- cCGGCCCCgGGCCAcggcucccCGCUGACguACCc- -3'
miRNA:   3'- uGCUGGGGgUUGGU--------GCGGCUG--UGGaa -5'
5127 3' -59.6 NC_001798.1 + 62440 0.66 0.758214
Target:  5'- --aGCCCCCGgacgucgccgguggGCCGCGCgaCGGCGCCc- -3'
miRNA:   3'- ugcUGGGGGU--------------UGGUGCG--GCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 118820 0.66 0.761018
Target:  5'- -gGACCUggggCUcACgCACGCCGGCACCg- -3'
miRNA:   3'- ugCUGGG----GGuUG-GUGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 153251 0.66 0.761018
Target:  5'- -gGACCCgCGcGCCGcCGCCGcCGCCUc -3'
miRNA:   3'- ugCUGGGgGU-UGGU-GCGGCuGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 11432 0.66 0.761018
Target:  5'- aACG-CCCCCGggguuguaaAUCugGCCGcggggGCGCCUg -3'
miRNA:   3'- -UGCuGGGGGU---------UGGugCGGC-----UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 97006 0.66 0.770291
Target:  5'- cCGGCCCgCC-GCC-CGCCGAUAgCUc -3'
miRNA:   3'- uGCUGGG-GGuUGGuGCGGCUGUgGAa -5'
5127 3' -59.6 NC_001798.1 + 127743 0.66 0.770291
Target:  5'- uGCGGCCgCCGcaaCAC-CCGGCGCCa- -3'
miRNA:   3'- -UGCUGGgGGUug-GUGcGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 115860 0.66 0.770291
Target:  5'- uUGGCCgCCAcGCCaugGCGCCGGCuACCa- -3'
miRNA:   3'- uGCUGGgGGU-UGG---UGCGGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 22810 0.66 0.770291
Target:  5'- gGCGGCCCCgGAUCuccggauccaGCCGACggACCg- -3'
miRNA:   3'- -UGCUGGGGgUUGGug--------CGGCUG--UGGaa -5'
5127 3' -59.6 NC_001798.1 + 126423 0.66 0.769369
Target:  5'- -aGGCCCCCGGCCcuGCGgCCaagcuaaGGCGCCc- -3'
miRNA:   3'- ugCUGGGGGUUGG--UGC-GG-------CUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 150883 0.66 0.761018
Target:  5'- cGCGggucGCCCCCGcACCGcCGCCcccGCGCCg- -3'
miRNA:   3'- -UGC----UGGGGGU-UGGU-GCGGc--UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 150257 0.66 0.761018
Target:  5'- cCGGCCcuCCCGACCcgcgcGCGUCGgucGCGCCUg -3'
miRNA:   3'- uGCUGG--GGGUUGG-----UGCGGC---UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 122869 0.66 0.761018
Target:  5'- gACGACauCCCCGcCCGCuucGCCGACuCCg- -3'
miRNA:   3'- -UGCUG--GGGGUuGGUG---CGGCUGuGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.