miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 136839 1.05 0.002419
Target:  5'- cACGACCCCCAACCACGCCGACACCUUg -3'
miRNA:   3'- -UGCUGGGGGUUGGUGCGGCUGUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 23296 0.88 0.039392
Target:  5'- cGCGACCCCCGgcGCCcCGCCGACACCa- -3'
miRNA:   3'- -UGCUGGGGGU--UGGuGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 25173 0.79 0.149135
Target:  5'- cGCG-CCCCCcGCCcCGCCGACGCCg- -3'
miRNA:   3'- -UGCuGGGGGuUGGuGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 147248 0.78 0.18652
Target:  5'- -gGGCCCCgGGCCGCGCCGGCGgCg- -3'
miRNA:   3'- ugCUGGGGgUUGGUGCGGCUGUgGaa -5'
5127 3' -59.6 NC_001798.1 + 107223 0.76 0.226451
Target:  5'- --uGCCCCCGACCGCGCCcGGCACg-- -3'
miRNA:   3'- ugcUGGGGGUUGGUGCGG-CUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 30744 0.76 0.249009
Target:  5'- aACGACCCCCGGacCCGCGUgGAgGCCg- -3'
miRNA:   3'- -UGCUGGGGGUU--GGUGCGgCUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 20494 0.76 0.249009
Target:  5'- cGCGAUCCCCGGaagaCugGCCGGgGCCUg -3'
miRNA:   3'- -UGCUGGGGGUUg---GugCGGCUgUGGAa -5'
5127 3' -59.6 NC_001798.1 + 25109 0.75 0.260361
Target:  5'- cGCGcCCCCCGaagaagaGCCGCGCgGACGCCc- -3'
miRNA:   3'- -UGCuGGGGGU-------UGGUGCGgCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 103578 0.75 0.26097
Target:  5'- gGCG-CCUCCAACCGCucgcgcauuuccGCCGACGCCa- -3'
miRNA:   3'- -UGCuGGGGGUUGGUG------------CGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 93262 0.75 0.279781
Target:  5'- aACG-CCCgCGGcCCGCGCCGGCGCCg- -3'
miRNA:   3'- -UGCuGGGgGUU-GGUGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 108281 0.75 0.286287
Target:  5'- aGCGACCCCCAGCgCggACGCUuGGCGCCc- -3'
miRNA:   3'- -UGCUGGGGGUUG-G--UGCGG-CUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 78839 0.75 0.292912
Target:  5'- cCGGCCCCUGGCgcggCACGCCGGcCGCCUg -3'
miRNA:   3'- uGCUGGGGGUUG----GUGCGGCU-GUGGAa -5'
5127 3' -59.6 NC_001798.1 + 3148 0.74 0.306519
Target:  5'- cCGGCCgCCGccACCAcCGCCGGCGCCg- -3'
miRNA:   3'- uGCUGGgGGU--UGGU-GCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 24730 0.74 0.313501
Target:  5'- cGCGGCCgCCCcGCCgcACGCCGACGCg-- -3'
miRNA:   3'- -UGCUGG-GGGuUGG--UGCGGCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 103374 0.74 0.320604
Target:  5'- aACGGCCCCCGagggucguugACCACGgCGAgCACCc- -3'
miRNA:   3'- -UGCUGGGGGU----------UGGUGCgGCU-GUGGaa -5'
5127 3' -59.6 NC_001798.1 + 125365 0.73 0.335169
Target:  5'- cACG-CCCCCugAGuuGCGCCGGCACCa- -3'
miRNA:   3'- -UGCuGGGGG--UUggUGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 24986 0.73 0.335169
Target:  5'- uGCG-CCCCCug-CugGCCGACACCg- -3'
miRNA:   3'- -UGCuGGGGGuugGugCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 71805 0.73 0.34263
Target:  5'- cUGACCCCCAccaccccgGCCACGCCGcuguccGCGCUg- -3'
miRNA:   3'- uGCUGGGGGU--------UGGUGCGGC------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 66644 0.73 0.350211
Target:  5'- gGCGuCCCCCAgaaACCGCGCCacCGCCUc -3'
miRNA:   3'- -UGCuGGGGGU---UGGUGCGGcuGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 130454 0.73 0.373661
Target:  5'- -gGGCCCCCGGCCACuGCUGcucCACCa- -3'
miRNA:   3'- ugCUGGGGGUUGGUG-CGGCu--GUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.