miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 685 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 715 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 745 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 775 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 805 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 835 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 865 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 895 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 1167 0.71 0.459123
Target:  5'- gGCGGUCCCCAccaccuCCACGCCGcCGCCc- -3'
miRNA:   3'- -UGCUGGGGGUu-----GGUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 1342 0.67 0.683611
Target:  5'- cGCGGCCCgCgCAGCUcCGCCGGgcCGCCg- -3'
miRNA:   3'- -UGCUGGG-G-GUUGGuGCGGCU--GUGGaa -5'
5127 3' -59.6 NC_001798.1 + 1694 0.66 0.721944
Target:  5'- -aGACCCCCGGCCcgaacacGCGgCCGGagGCCa- -3'
miRNA:   3'- ugCUGGGGGUUGG-------UGC-GGCUg-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 3148 0.74 0.306519
Target:  5'- cCGGCCgCCGccACCAcCGCCGGCGCCg- -3'
miRNA:   3'- uGCUGGgGGU--UGGU-GCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 3244 0.66 0.722914
Target:  5'- gGCGAgcaCCCCC-GCgGCGCCGuagccggcggGCACCg- -3'
miRNA:   3'- -UGCU---GGGGGuUGgUGCGGC----------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 3801 0.67 0.673662
Target:  5'- -aGGCCUCgAACCGgGCCcGCGCCUc -3'
miRNA:   3'- ugCUGGGGgUUGGUgCGGcUGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 3855 0.66 0.722914
Target:  5'- gGCGGCUgucgCCCAGCC-CGCCGuacagcacGCGCCc- -3'
miRNA:   3'- -UGCUGG----GGGUUGGuGCGGC--------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 3905 0.66 0.761018
Target:  5'- cCGGCCCCgGGCCAcggcucccCGCUGACguACCc- -3'
miRNA:   3'- uGCUGGGGgUUGGU--------GCGGCUG--UGGaa -5'
5127 3' -59.6 NC_001798.1 + 4135 0.68 0.613561
Target:  5'- gGCGccGCCCCCGggGCCcuCGCgGGCACCc- -3'
miRNA:   3'- -UGC--UGGGGGU--UGGu-GCGgCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 4734 0.67 0.693519
Target:  5'- gACGGCCUCC--CCggACGCCGGgGCCg- -3'
miRNA:   3'- -UGCUGGGGGuuGG--UGCGGCUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 5396 0.7 0.486734
Target:  5'- gGCGGCCCgUUggUCGCGCCGcCGCCg- -3'
miRNA:   3'- -UGCUGGG-GGuuGGUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 6995 0.7 0.505571
Target:  5'- --uACCCCCAcccaACCagcGCGCCGGCGCUUa -3'
miRNA:   3'- ugcUGGGGGU----UGG---UGCGGCUGUGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.