Results 1 - 20 of 218 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 685 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 715 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 745 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 775 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 805 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 835 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 865 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 895 | 0.7 | 0.486734 |
Target: 5'- cCGACCCCCGcCCGC-CCGACcCCc- -3' miRNA: 3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 1167 | 0.71 | 0.459123 |
Target: 5'- gGCGGUCCCCAccaccuCCACGCCGcCGCCc- -3' miRNA: 3'- -UGCUGGGGGUu-----GGUGCGGCuGUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 1342 | 0.67 | 0.683611 |
Target: 5'- cGCGGCCCgCgCAGCUcCGCCGGgcCGCCg- -3' miRNA: 3'- -UGCUGGG-G-GUUGGuGCGGCU--GUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 1694 | 0.66 | 0.721944 |
Target: 5'- -aGACCCCCGGCCcgaacacGCGgCCGGagGCCa- -3' miRNA: 3'- ugCUGGGGGUUGG-------UGC-GGCUg-UGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 3148 | 0.74 | 0.306519 |
Target: 5'- cCGGCCgCCGccACCAcCGCCGGCGCCg- -3' miRNA: 3'- uGCUGGgGGU--UGGU-GCGGCUGUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 3244 | 0.66 | 0.722914 |
Target: 5'- gGCGAgcaCCCCC-GCgGCGCCGuagccggcggGCACCg- -3' miRNA: 3'- -UGCU---GGGGGuUGgUGCGGC----------UGUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 3801 | 0.67 | 0.673662 |
Target: 5'- -aGGCCUCgAACCGgGCCcGCGCCUc -3' miRNA: 3'- ugCUGGGGgUUGGUgCGGcUGUGGAa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 3855 | 0.66 | 0.722914 |
Target: 5'- gGCGGCUgucgCCCAGCC-CGCCGuacagcacGCGCCc- -3' miRNA: 3'- -UGCUGG----GGGUUGGuGCGGC--------UGUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 3905 | 0.66 | 0.761018 |
Target: 5'- cCGGCCCCgGGCCAcggcucccCGCUGACguACCc- -3' miRNA: 3'- uGCUGGGGgUUGGU--------GCGGCUG--UGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 4135 | 0.68 | 0.613561 |
Target: 5'- gGCGccGCCCCCGggGCCcuCGCgGGCACCc- -3' miRNA: 3'- -UGC--UGGGGGU--UGGu-GCGgCUGUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 4734 | 0.67 | 0.693519 |
Target: 5'- gACGGCCUCC--CCggACGCCGGgGCCg- -3' miRNA: 3'- -UGCUGGGGGuuGG--UGCGGCUgUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 5396 | 0.7 | 0.486734 |
Target: 5'- gGCGGCCCgUUggUCGCGCCGcCGCCg- -3' miRNA: 3'- -UGCUGGG-GGuuGGUGCGGCuGUGGaa -5' |
|||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 6995 | 0.7 | 0.505571 |
Target: 5'- --uACCCCCAcccaACCagcGCGCCGGCGCUUa -3' miRNA: 3'- ugcUGGGGGU----UGG---UGCGGCUGUGGAa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home