miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 29955 0.66 0.751635
Target:  5'- cCGACCCCCGGCC-CGCUuaagcggucggGGgACCc- -3'
miRNA:   3'- uGCUGGGGGUUGGuGCGG-----------CUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 47659 0.66 0.751635
Target:  5'- gACGACUUCCGccGCgGCGCUGGC-CCg- -3'
miRNA:   3'- -UGCUGGGGGU--UGgUGCGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 81635 0.66 0.751635
Target:  5'- cACGGCCCUC-GCCAC-CC-ACACCg- -3'
miRNA:   3'- -UGCUGGGGGuUGGUGcGGcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 115532 0.66 0.751635
Target:  5'- cGCGGCCCcggCCGGCCccgGCGCgGACAUg-- -3'
miRNA:   3'- -UGCUGGG---GGUUGG---UGCGgCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 140228 0.66 0.751635
Target:  5'- cCGACCCagaCGGCCuCGCUGGagucCACCUUc -3'
miRNA:   3'- uGCUGGGg--GUUGGuGCGGCU----GUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 80635 0.66 0.751635
Target:  5'- cGCGACCCaCCGcACCccCGCCGcGCGCgUUa -3'
miRNA:   3'- -UGCUGGG-GGU-UGGu-GCGGC-UGUGgAA- -5'
5127 3' -59.6 NC_001798.1 + 96667 0.66 0.751635
Target:  5'- aGCGGCgCCaCGGCCGCGCUGgaGCGCg-- -3'
miRNA:   3'- -UGCUGgGG-GUUGGUGCGGC--UGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 102402 0.66 0.751635
Target:  5'- gAUGGCCCCCAccAgCGCGgCGAUcuggGCCUc -3'
miRNA:   3'- -UGCUGGGGGU--UgGUGCgGCUG----UGGAa -5'
5127 3' -59.6 NC_001798.1 + 134012 0.66 0.751635
Target:  5'- gGCuGCCCCC-GCgCACGCgCGACuGCCUc -3'
miRNA:   3'- -UGcUGGGGGuUG-GUGCG-GCUG-UGGAa -5'
5127 3' -59.6 NC_001798.1 + 125753 0.66 0.751635
Target:  5'- cGCGGCCCugcgCCGACguUugGCCGagacGCACCUc -3'
miRNA:   3'- -UGCUGGG----GGUUG--GugCGGC----UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 92169 0.66 0.742151
Target:  5'- -gGGCCCCCGuuCC-UGCCGGuCGCCg- -3'
miRNA:   3'- ugCUGGGGGUu-GGuGCGGCU-GUGGaa -5'
5127 3' -59.6 NC_001798.1 + 123754 0.66 0.742151
Target:  5'- aACGcACCCCCgGACCcCGCUGcuguGCACCc- -3'
miRNA:   3'- -UGC-UGGGGG-UUGGuGCGGC----UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 116874 0.66 0.742151
Target:  5'- cAUGGCCCCCcagcACCugGaCC-ACACCa- -3'
miRNA:   3'- -UGCUGGGGGu---UGGugC-GGcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 128598 0.66 0.742151
Target:  5'- cGCGGgCgUCAacgACgACGCCGACGCCg- -3'
miRNA:   3'- -UGCUgGgGGU---UGgUGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 131340 0.66 0.742151
Target:  5'- cGCG-CCCCgGGCgCgACGUCGGCGCCc- -3'
miRNA:   3'- -UGCuGGGGgUUG-G-UGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 135776 0.66 0.742151
Target:  5'- cCGGCCgCCGGCC-CGCCGGaggagGCCg- -3'
miRNA:   3'- uGCUGGgGGUUGGuGCGGCUg----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 137977 0.66 0.739287
Target:  5'- aGCG-CCCCCGccugGgCGCGCCGcagcucgcggucgcGCGCCUg -3'
miRNA:   3'- -UGCuGGGGGU----UgGUGCGGC--------------UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 121703 0.66 0.732574
Target:  5'- cGCGGCUCCCGccGCCGCGaCGGaggcggcggccCACCUg -3'
miRNA:   3'- -UGCUGGGGGU--UGGUGCgGCU-----------GUGGAa -5'
5127 3' -59.6 NC_001798.1 + 118068 0.66 0.732574
Target:  5'- aGCGACCCCgCccuGCUACGCa-GCGCCc- -3'
miRNA:   3'- -UGCUGGGG-Gu--UGGUGCGgcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 46386 0.66 0.732574
Target:  5'- aGCGAUCCCCcGCgccguCugGCCGGCaggGCCa- -3'
miRNA:   3'- -UGCUGGGGGuUG-----GugCGGCUG---UGGaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.