Results 21 - 40 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5127 | 3' | -59.6 | NC_001798.1 | + | 29955 | 0.66 | 0.751635 |
Target: 5'- cCGACCCCCGGCC-CGCUuaagcggucggGGgACCc- -3' miRNA: 3'- uGCUGGGGGUUGGuGCGG-----------CUgUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 47659 | 0.66 | 0.751635 |
Target: 5'- gACGACUUCCGccGCgGCGCUGGC-CCg- -3' miRNA: 3'- -UGCUGGGGGU--UGgUGCGGCUGuGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 81635 | 0.66 | 0.751635 |
Target: 5'- cACGGCCCUC-GCCAC-CC-ACACCg- -3' miRNA: 3'- -UGCUGGGGGuUGGUGcGGcUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 115532 | 0.66 | 0.751635 |
Target: 5'- cGCGGCCCcggCCGGCCccgGCGCgGACAUg-- -3' miRNA: 3'- -UGCUGGG---GGUUGG---UGCGgCUGUGgaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 140228 | 0.66 | 0.751635 |
Target: 5'- cCGACCCagaCGGCCuCGCUGGagucCACCUUc -3' miRNA: 3'- uGCUGGGg--GUUGGuGCGGCU----GUGGAA- -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 80635 | 0.66 | 0.751635 |
Target: 5'- cGCGACCCaCCGcACCccCGCCGcGCGCgUUa -3' miRNA: 3'- -UGCUGGG-GGU-UGGu-GCGGC-UGUGgAA- -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 96667 | 0.66 | 0.751635 |
Target: 5'- aGCGGCgCCaCGGCCGCGCUGgaGCGCg-- -3' miRNA: 3'- -UGCUGgGG-GUUGGUGCGGC--UGUGgaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 102402 | 0.66 | 0.751635 |
Target: 5'- gAUGGCCCCCAccAgCGCGgCGAUcuggGCCUc -3' miRNA: 3'- -UGCUGGGGGU--UgGUGCgGCUG----UGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 134012 | 0.66 | 0.751635 |
Target: 5'- gGCuGCCCCC-GCgCACGCgCGACuGCCUc -3' miRNA: 3'- -UGcUGGGGGuUG-GUGCG-GCUG-UGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 125753 | 0.66 | 0.751635 |
Target: 5'- cGCGGCCCugcgCCGACguUugGCCGagacGCACCUc -3' miRNA: 3'- -UGCUGGG----GGUUG--GugCGGC----UGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 92169 | 0.66 | 0.742151 |
Target: 5'- -gGGCCCCCGuuCC-UGCCGGuCGCCg- -3' miRNA: 3'- ugCUGGGGGUu-GGuGCGGCU-GUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 123754 | 0.66 | 0.742151 |
Target: 5'- aACGcACCCCCgGACCcCGCUGcuguGCACCc- -3' miRNA: 3'- -UGC-UGGGGG-UUGGuGCGGC----UGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 116874 | 0.66 | 0.742151 |
Target: 5'- cAUGGCCCCCcagcACCugGaCC-ACACCa- -3' miRNA: 3'- -UGCUGGGGGu---UGGugC-GGcUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 128598 | 0.66 | 0.742151 |
Target: 5'- cGCGGgCgUCAacgACgACGCCGACGCCg- -3' miRNA: 3'- -UGCUgGgGGU---UGgUGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 131340 | 0.66 | 0.742151 |
Target: 5'- cGCG-CCCCgGGCgCgACGUCGGCGCCc- -3' miRNA: 3'- -UGCuGGGGgUUG-G-UGCGGCUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 135776 | 0.66 | 0.742151 |
Target: 5'- cCGGCCgCCGGCC-CGCCGGaggagGCCg- -3' miRNA: 3'- uGCUGGgGGUUGGuGCGGCUg----UGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 137977 | 0.66 | 0.739287 |
Target: 5'- aGCG-CCCCCGccugGgCGCGCCGcagcucgcggucgcGCGCCUg -3' miRNA: 3'- -UGCuGGGGGU----UgGUGCGGC--------------UGUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 121703 | 0.66 | 0.732574 |
Target: 5'- cGCGGCUCCCGccGCCGCGaCGGaggcggcggccCACCUg -3' miRNA: 3'- -UGCUGGGGGU--UGGUGCgGCU-----------GUGGAa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 118068 | 0.66 | 0.732574 |
Target: 5'- aGCGACCCCgCccuGCUACGCa-GCGCCc- -3' miRNA: 3'- -UGCUGGGG-Gu--UGGUGCGgcUGUGGaa -5' |
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5127 | 3' | -59.6 | NC_001798.1 | + | 46386 | 0.66 | 0.732574 |
Target: 5'- aGCGAUCCCCcGCgccguCugGCCGGCaggGCCa- -3' miRNA: 3'- -UGCUGGGGGuUG-----GugCGGCUG---UGGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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