miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 101839 0.66 0.535443
Target:  5'- gCGGGGG-GaGGCGUGGgUCCcGGcGGCg -3'
miRNA:   3'- -GCUCCCgCaCCGCACCgAGGcCC-CUG- -5'
5127 5' -64.3 NC_001798.1 + 129314 0.66 0.526129
Target:  5'- gGAGGGCGUGaCGUuccGC-CUGGaGGACg -3'
miRNA:   3'- gCUCCCGCACcGCAc--CGaGGCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 66444 0.66 0.526129
Target:  5'- -uAGGGCGUGuauGCGUuggggGGgaCCGGGGGa -3'
miRNA:   3'- gcUCCCGCAC---CGCA-----CCgaGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 15683 0.66 0.526129
Target:  5'- uCGGGGG-GaGuaGUGGUUgCGGGGGCg -3'
miRNA:   3'- -GCUCCCgCaCcgCACCGAgGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 88077 0.67 0.516877
Target:  5'- -uGGGGCGgcGGCGUcuaGCUCgCGGaGGGCg -3'
miRNA:   3'- gcUCCCGCa-CCGCAc--CGAG-GCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 41438 0.67 0.516877
Target:  5'- aCGcGGGCGUGGgG-GGUccaugccccgCCGGGGGg -3'
miRNA:   3'- -GCuCCCGCACCgCaCCGa---------GGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 26821 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 26866 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 26911 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 26955 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 27000 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 25583 0.67 0.507691
Target:  5'- --cGGGCGaggaccUGGCcgcgGGCcgcgCCGGGGGCg -3'
miRNA:   3'- gcuCCCGC------ACCGca--CCGa---GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 35810 0.67 0.507691
Target:  5'- gCGGGGGgGgGGCGUcgGGaCUCgCGGaGGGCc -3'
miRNA:   3'- -GCUCCCgCaCCGCA--CC-GAG-GCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 10594 0.67 0.505861
Target:  5'- aCGGGGGacuguaugcuaUGGCGagcGGUUCCGGGGcGCg -3'
miRNA:   3'- -GCUCCCgc---------ACCGCa--CCGAGGCCCC-UG- -5'
5127 5' -64.3 NC_001798.1 + 102061 0.67 0.498574
Target:  5'- gCGuGGGgGUGGUGguagGGCcccaCCGGcGGAUa -3'
miRNA:   3'- -GCuCCCgCACCGCa---CCGa---GGCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 15039 0.67 0.498574
Target:  5'- gCGGGaGCGUggGGCGgaugGGC-CCGGGGcGCg -3'
miRNA:   3'- -GCUCcCGCA--CCGCa---CCGaGGCCCC-UG- -5'
5127 5' -64.3 NC_001798.1 + 3891 0.67 0.498574
Target:  5'- cCGGGGGCGgggGGCc-GGCcCCGGGccacGGCu -3'
miRNA:   3'- -GCUCCCGCa--CCGcaCCGaGGCCC----CUG- -5'
5127 5' -64.3 NC_001798.1 + 146042 0.67 0.494948
Target:  5'- gGGGGGCGUGGUGgugaacgauggggGGaacaCGGGGGg -3'
miRNA:   3'- gCUCCCGCACCGCa------------CCgag-GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 102473 0.67 0.489532
Target:  5'- gGuGGGCGggaggaGGCG-GGUagUgCGGGGACg -3'
miRNA:   3'- gCuCCCGCa-----CCGCaCCG--AgGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 15259 0.67 0.489532
Target:  5'- uGGGGGgGUacgGGCGgugccccgGGUUCCGGGcguGGCg -3'
miRNA:   3'- gCUCCCgCA---CCGCa-------CCGAGGCCC---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.