miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 66000 0.66 0.870399
Target:  5'- uCCCACCACgA-CCCCUGucgccccAGGGcgauGUGGCg -3'
miRNA:   3'- -GGGUGGUGgUaGGGGGC-------UCUC----UACUG- -5'
5128 5' -57.2 NC_001798.1 + 28236 0.66 0.87613
Target:  5'- gCCGCCGCCugcCCCCCGccgccgccgcgcaaGGAGcgcgGGCc -3'
miRNA:   3'- gGGUGGUGGua-GGGGGC--------------UCUCua--CUG- -5'
5128 5' -57.2 NC_001798.1 + 153446 0.66 0.871122
Target:  5'- gCgCGCgGCCGUCUCCCaGGccaccAGAUGGCg -3'
miRNA:   3'- -GgGUGgUGGUAGGGGGcUC-----UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 146857 0.66 0.871122
Target:  5'- gCCCGCCGCCGa---UCGAGAGG-GACu -3'
miRNA:   3'- -GGGUGGUGGUagggGGCUCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 68236 0.66 0.871122
Target:  5'- cCCCGCCgcgcgccacACCAcgCCCUCcAG-GAUGACa -3'
miRNA:   3'- -GGGUGG---------UGGUa-GGGGGcUCuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 28969 0.66 0.871122
Target:  5'- cCCCGCCgcuccGCCcgCCCCa-GGGGgcGGCg -3'
miRNA:   3'- -GGGUGG-----UGGuaGGGGgcUCUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 21934 0.66 0.871122
Target:  5'- aCCCugCGgcCCcgCCCCCuuugggcgGAGcgcgGGAUGACg -3'
miRNA:   3'- -GGGugGU--GGuaGGGGG--------CUC----UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 146622 0.66 0.871122
Target:  5'- uCCCGCCGCauuaggCCCCCGcGGGcAUccGGCg -3'
miRNA:   3'- -GGGUGGUGgua---GGGGGCuCUC-UA--CUG- -5'
5128 5' -57.2 NC_001798.1 + 59633 0.66 0.871122
Target:  5'- cUCCGCCGCCucggguccguAUCUCgCgGAGAGGgggGGCg -3'
miRNA:   3'- -GGGUGGUGG----------UAGGG-GgCUCUCUa--CUG- -5'
5128 5' -57.2 NC_001798.1 + 90628 0.66 0.878245
Target:  5'- cUCCACCACC-UCCgCCuCGAagugguccgcgGAGAUGcCg -3'
miRNA:   3'- -GGGUGGUGGuAGG-GG-GCU-----------CUCUACuG- -5'
5128 5' -57.2 NC_001798.1 + 112754 0.66 0.878245
Target:  5'- aCCGCCACguCAUCagCCCGcggGGAGGgcgGACg -3'
miRNA:   3'- gGGUGGUG--GUAGg-GGGC---UCUCUa--CUG- -5'
5128 5' -57.2 NC_001798.1 + 54221 0.66 0.878245
Target:  5'- aCCGCCGCCccccuGUUCCCCac--GAUGACc -3'
miRNA:   3'- gGGUGGUGG-----UAGGGGGcucuCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 78964 0.66 0.891848
Target:  5'- gCCGCguccgggggggCGCCuggaaGUCCCCCGAGGGGUuccGCg -3'
miRNA:   3'- gGGUG-----------GUGG-----UAGGGGGCUCUCUAc--UG- -5'
5128 5' -57.2 NC_001798.1 + 146008 0.66 0.887858
Target:  5'- aCCGCCGCCAcCCCCCaaacagccaaggcgcGGuGGggGGCg -3'
miRNA:   3'- gGGUGGUGGUaGGGGG---------------CUcUCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 34555 0.66 0.885155
Target:  5'- cCCCGgaGCCuggGUCCCCCGGcGGAcGGCu -3'
miRNA:   3'- -GGGUggUGG---UAGGGGGCUcUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 71092 0.66 0.885155
Target:  5'- gCCCGCgGUCGgcgugcgcgCCCCCGGGGacgcuGAUGGCg -3'
miRNA:   3'- -GGGUGgUGGUa--------GGGGGCUCU-----CUACUG- -5'
5128 5' -57.2 NC_001798.1 + 77958 0.66 0.885155
Target:  5'- gCUCGCCGCCAUCCaCCGccucggcuGGAGcgcGGCg -3'
miRNA:   3'- -GGGUGGUGGUAGGgGGC--------UCUCua-CUG- -5'
5128 5' -57.2 NC_001798.1 + 135114 0.66 0.884473
Target:  5'- gCCACCACCAUccaacuacucgacCCCCCGGcGGccgucgGGCc -3'
miRNA:   3'- gGGUGGUGGUA-------------GGGGGCUcUCua----CUG- -5'
5128 5' -57.2 NC_001798.1 + 23817 0.66 0.884473
Target:  5'- gCCgGCCcCCcgCCCCCGGGgcgcgugcuguacGGcgGGCu -3'
miRNA:   3'- -GGgUGGuGGuaGGGGGCUC-------------UCuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 14741 0.66 0.882417
Target:  5'- cCCCACCcCCA-CCCCCuaaucccgcucGGGUGGCa -3'
miRNA:   3'- -GGGUGGuGGUaGGGGGcuc--------UCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.